Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01132 ATGGAGCTGAGTAGCATTAAAGATGCATTTGATCGTGTAGCCAAGAAGCAAAAATTATCCTCTTCCAAGTCTCAGGAAGTTGTTGACCAGGTGGGGCGTGAAATTGAGCAGGCATTGGCAACAATTCAATCACCCCATGACCTCTCTTCTCCTGTTGACCAGAAATCCATTCTCACAGAACTTAAGTTCAAGATTAATGCTATTGGACCACTTCAACAGTTGGAAGGATCAAATAAGGAATTGAACGCAAGTCTTAGCAAGTATCAAAAGCTCCTTGAAAAATTGTTAAACCCTGACATATCCAAGGCATACAGAAATGTGGACTTTGATACTCGTATTATCAATCAGATCATTGCAAACCACTTTTACCGTCAAGGTTTATTTGATCTTGGAGATAGCATTGTAAATGAGGCTGGAGAGCCTGATGCAACTGCACTTAGATCTCAATTTTCGGAAATGCATCAGATTATTGGAGCTATGAGGGAGAAAAACCTTCAGCCTGCTCTGACATGGGTCTCTGCTAATCGAGAGAAACTTTTTGATATTGGCTCTAATCTTGAGCTTAAGATTCACAGACTGCAGTTTGTAGAGGTCCTGCAAAATGGGACGCGGGCTGATGCCTTAAAGTACGCCCGAACTTATCTTGCTCCTTTTGCATCCGTCAACAAGGATGAGTTCCCAAAGCTCATGGGTTGCCTCTTGTATGCAGGAAGACTAGAGAGCTCCCCTTATTCTGAGTTGATGTCTCCAATTCATTGGGAGATGACAACTGAAGAGCTGGCACGGCAGTTCTGCACTCTCTTGGGGCAGTCCTATGAGAATCCACTTAGTGTAGCAGTTGCTGCAGGAGTTGAGGGGTTGCCTACCCTGTTAAAGCTGACAAATGTAATGGCAGCAAAGAAGCAGGAGTGGCAGGAAATGAAACAGTTGCCTGTGCCTGTAGAATTGGGCAAGGAATTTCAGTTTCACTCGATTTTTGTTTGCCCTGTGAGTAGGGATCAAGGAAGTGAAGAGAATCCCCCAATGCTGTTGCCATGCTTACATGTCCTTTGCAAACAATCAATTATGAAGTTATCAAAAAACAGCACCACCCGAACATTCAAGTGTCCATATTGTCCAGCCGAAGCGACAGTTACACACTGCAGACAACTGTATTTCTGA 1161 0.4358 MELSSIKDAFDRVAKKQKLSSSKSQEVVDQVGREIEQALATIQSPHDLSSPVDQKSILTELKFKINAIGPLQQLEGSNKELNASLSKYQKLLEKLLNPDISKAYRNVDFDTRIINQIIANHFYRQGLFDLGDSIVNEAGEPDATALRSQFSEMHQIIGAMREKNLQPALTWVSANREKLFDIGSNLELKIHRLQFVEVLQNGTRADALKYARTYLAPFASVNKDEFPKLMGCLLYAGRLESSPYSELMSPIHWEMTTEELARQFCTLLGQSYENPLSVAVAAGVEGLPTLLKLTNVMAAKKQEWQEMKQLPVPVELGKEFQFHSIFVCPVSRDQGSEENPPMLLPCLHVLCKQSIMKLSKNSTTRTFKCPYCPAEATVTHCRQLYF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01132 386 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 149 206 IPR006595 -
Lapu6g01132 386 FunFam Regulator of gluconeogenesis Rmd5 320 385 - -
Lapu6g01132 386 Pfam RING-type zinc-finger 328 370 IPR027370 -
Lapu6g01132 386 ProSiteProfiles LIS1 homology (LisH) motif profile. 110 142 IPR006594 GO:0005515
Lapu6g01132 386 Coils Coil 71 91 - -
Lapu6g01132 386 ProSiteProfiles Gid-type RING finger profile. 328 372 IPR044063 GO:0061630
Lapu6g01132 386 SMART toby_final6 202 296 IPR013144 -
Lapu6g01132 386 SUPERFAMILY RING/U-box 327 377 - -
Lapu6g01132 386 SMART ring_2 328 372 IPR001841 -
Lapu6g01132 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 385 IPR013083 -
Lapu6g01132 386 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 2 385 IPR045098 GO:0004842|GO:0043161
Lapu6g01132 386 CDD dRING_Rmd5p-like 326 375 IPR037683 -
Lapu6g01132 386 Pfam CTLH/CRA C-terminal to LisH motif domain 149 290 IPR024964 -
Lapu6g01132 386 SMART ctlh 149 206 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01132 Lapu-Chr6 11286288 11292500 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01132 K23333 - gmx:100799584 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01132 6 11286288 11292500 Lapu6g01132 6 11286288 11292500 ECH