Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g01127 ATGGCTTCCGCCGTCTTAGCTAACCGGAACGAACCCAATTGGCCACAGCATAGAGTCGGTGGAGCTGGATTCATGGGAAAAGCACCCTTCGTTAACCCTAACCCTAATTCTAATCCTAAATTAGCAAATAGCAAAAGGACCCAATCGGCTTCGGACGATGCTTCTTCTATCAACAGGCGATCCAACGAAGTAGTGACTCACTCGCAATACGTGTCCTTCAACATCGGATCCTTATCGAAGAAGGAACTCAACGACGTCAAGAATAGGCTTGTCGCAGAGCTCGAACAGGTTCAGAAATTCAGAAATCGAATCGAGTCATGGGAGTTACAACCTGGGCAGAACTTCAACGGCCACCCGAAGAAGTCGTCAAGCAAAAAGGTGTCCGGCAACAAGCGACCATTGCCGTTGAATTCCGTGAAGGATTTCAAACGGTCACATTCGGAAGTTGGGAACTTGATGAAAGGATGCTCGCAGGTTTTGCAGAAGTTGATGAAACACAAACATGGTTGGATCTTCAATGTTCCAGTTGACGCTGTCGGAATGGGTCTCCACGATTACTACGATATAATTAAACAGCCTATGGATCTGGGAACGGTGAAGTCCAATCTCTCCAAAAACAAGTACTCGACGCCTTCGGATTTCGCCTCTGATGTGAGGTTAACCTTCAACAATGCACTGACTTATAACCCTAAGGGTCACGATGTGTACACCATGGCGGAGCAGCTTTTGACGAGGTTTGAGGAGCTGTATCGCCCGATGCACGAGAAATTCGAAGATTTGGTTGGACATGATCGTGATTTTGAGGAGGAATTGCAGGCCAGTTCGTGGAGCCACGTTGAGCCAGAGAGGGTAAAGAAGAAGGAGAACCTGATCCCTCCTGCGAAATTGCAACAAGAGCCTCCGAAGCCTCCTGCAAGTTCTTCTAATCCTCCTTTGCTGCAGTCTCCCGTGCGCACACCTTCTCCAATGCGAGCCCCCCCCGTGAAGCCTTTGAAGCAACCTAAACCGAAGGCTAAGGATCCCAACAAGAGGGAAATGAGTCTTGAAGAGAAACACAAGCTGGGGTTAGGACTGCAGAGTTTGCCAGCAGAGAAAATGGAACAGGTGGTGCAGATCATAAGGAGGAGGAACGGGCATTTGAAGCAGGACGGGGATGAGATCGAGCTAGATATTGAGGCTGTTGACACAGAGACCCTTTGGGAACTTGATCGATTGGTCACTAATTATAAGAAGATGGTTAGCAAGATTAAGCGGCAGGCATTGATGGGCAACATCAACAACAATGTCGCGCCAAACAAAGCCAATATGGAATTGCCTGCTGGTGAGAAGGTTGATGGGATGCCAACTGAGGTGAAGAAGCCAAAGAGAGTAGAAGCAGGAGATGAGGATGTTGACATTGGGGATGAGATGCCAATGAGTATGTTTCCCCCTGTGGAGATTGAGAAAGATAAAGATGTTGCTGCTGGTCATGCAACTAGTAGTTCGAGTAGCTCTAGTGGTTCGAGCAGTGACTCCTCATCGTCAAGTGTTTTATTGCCATTGCAGATTCGGATTCCGGGAGTTCCTCAGGAAGTGATTCTGAAGCAGACAATGGGCATTCGTAGCAGCGAGGGAGATTTGTTACTAGTGATCAAACATGATCATATGGGTGGGTGGATGAAGAAATGCTAG 1671 0.4794 MASAVLANRNEPNWPQHRVGGAGFMGKAPFVNPNPNSNPKLANSKRTQSASDDASSINRRSNEVVTHSQYVSFNIGSLSKKELNDVKNRLVAELEQVQKFRNRIESWELQPGQNFNGHPKKSSSKKVSGNKRPLPLNSVKDFKRSHSEVGNLMKGCSQVLQKLMKHKHGWIFNVPVDAVGMGLHDYYDIIKQPMDLGTVKSNLSKNKYSTPSDFASDVRLTFNNALTYNPKGHDVYTMAEQLLTRFEELYRPMHEKFEDLVGHDRDFEEELQASSWSHVEPERVKKKENLIPPAKLQQEPPKPPASSSNPPLLQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPAEKMEQVVQIIRRRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNYKKMVSKIKRQALMGNINNNVAPNKANMELPAGEKVDGMPTEVKKPKRVEAGDEDVDIGDEMPMSMFPPVEIEKDKDVAAGHATSSSSSSSGSSSDSSSSSVLLPLQIRIPGVPQEVILKQTMGIRSSEGDLLLVIKHDHMGGWMKKC* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g01127 556 MobiDBLite consensus disorder prediction 294 347 - -
Lapu6g01127 556 MobiDBLite consensus disorder prediction 31 63 - -
Lapu6g01127 556 Pfam Bromodomain 156 240 IPR001487 GO:0005515
Lapu6g01127 556 Gene3D - 339 416 IPR038336 -
Lapu6g01127 556 PRINTS Bromodomain signature 167 180 IPR001487 GO:0005515
Lapu6g01127 556 PRINTS Bromodomain signature 199 217 IPR001487 GO:0005515
Lapu6g01127 556 PRINTS Bromodomain signature 217 236 IPR001487 GO:0005515
Lapu6g01127 556 PRINTS Bromodomain signature 183 199 IPR001487 GO:0005515
Lapu6g01127 556 SUPERFAMILY Bromodomain 146 260 IPR036427 GO:0005515
Lapu6g01127 556 CDD Bromo_plant1 152 250 IPR037377 -
Lapu6g01127 556 MobiDBLite consensus disorder prediction 110 131 - -
Lapu6g01127 556 SMART bromo_6 145 255 IPR001487 GO:0005515
Lapu6g01127 556 MobiDBLite consensus disorder prediction 296 332 - -
Lapu6g01127 556 Coils Coil 83 110 - -
Lapu6g01127 556 Gene3D - 115 268 IPR036427 GO:0005515
Lapu6g01127 556 MobiDBLite consensus disorder prediction 333 347 - -
Lapu6g01127 556 MobiDBLite consensus disorder prediction 439 508 - -
Lapu6g01127 556 ProSiteProfiles Bromodomain profile. 164 236 IPR001487 GO:0005515
Lapu6g01127 556 MobiDBLite consensus disorder prediction 1 63 - -
Lapu6g01127 556 ProSiteProfiles NET domain profile. 336 417 IPR027353 -
Lapu6g01127 556 MobiDBLite consensus disorder prediction 110 138 - -
Lapu6g01127 556 MobiDBLite consensus disorder prediction 489 508 - -
Lapu6g01127 556 PANTHER OSJNBA0053K19.4 PROTEIN 60 508 - -
Lapu6g01127 556 MobiDBLite consensus disorder prediction 446 462 - -
Lapu6g01127 556 Pfam Bromodomain extra-terminal - transcription regulation 345 407 IPR027353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g01127 Lapu-Chr6 11224690 11241778 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g01127 - - vun:114187668 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g01127 6 11224690 11241778 Lapu6g01127 6 11224690 11241778 ECH