Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00984 ATGTCATGTTTACTGCCAAAATCCCATAGGACTAAGGTTTTCTCCCTGTTTCTTCACAAACTCGTAGGAAACTCGACCGAGTCGCATCACACCCTGGCTTCCTCAAGCTGGTTATGGTGTCGCCAATCGTCACACTCCTTTCCACACAAAACCACTCCTTGCTTCCCTTCAAATTCGATCCAAAGTACCAGCTTCTCTAACGCGCTTCTCCAAATTCGCTTTTGGGCCTCTGAGGCCGCCGCCATCGAACCCTCAACCTCTGATGGGCTCACGGTCCAACGAATTCTTGCCAATAATTGGACCATTCTCGACGAAAACGACGGTGATTGGAAGAGTCACGCCACCGCTATAGCTCAATCTATTCATTTGATCAAACGCCGCTTACAGTGGGAAAAATTGAAGGTGAGGTTGGATATGTTATCATTCCAGCTCGCTAAGGAAGACCTTTGGGATGATCCGGTGCGCGCAGGTAAAATAAGCCGAGAGCATGGTTCGCTCCTGGGGAAAATGAAAGAGGTGAATGCATTGGAACAAGAGTTACTTGAGCATATTGACATGATAAAGCTTGCCCGTGAAGAGAATGATGCGGATTTGGAATCGGAGTCATTGAAAGCGTTGCTTAACATGAGAAGAGATGCAAAAGAGAAAGAGCTAGAGGCGTTGCTTGCTGGGGAGCAAGATTCTTGTTCTTGCTACATTGAGGTTCAGGCTGGGGCTGGGGGTACGGAGAGCATGGACTGGGCATCAATGGTCATGCAGATGTACAAGTCATGGGCACAGCGGCGTGGATACAAAGTAACTTTAATGGATGAAATGCCTGGTGAGATTGCCGGAATCAAGCGAGCAACCATCAAAGTAGACGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGCAATAAGCGACGACATACTTCATTTGCTGCTGTGGCAGTTATTCCAATCCTAGGTGATGGATCTACCCATGTACAGATTAATGAATCTGATCTTCGAATTGAACGATTTCGGGCTGGTGGTGCTGGTGGCCAACATGTTAACACTACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAACGAAAGATCGCAGCATCAGAATAAGGCTTCAGCTATGGCTGTGCTTCAGTCAAGATTAGACCAACTGGAGATGGCACGCCAGGCACAGTTGAATGCGCAACATACACAATCTCTCACTGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCAGATCCCGACTCCGTCCTTGAGGGAGATCTAGACGGTTTCATCTTCAGCTATCTATCAGCTTCTTTGGATAAAGATGATGATGCTTAA 1431 0.4654 MSCLLPKSHRTKVFSLFLHKLVGNSTESHHTLASSSWLWCRQSSHSFPHKTTPCFPSNSIQSTSFSNALLQIRFWASEAAAIEPSTSDGLTVQRILANNWTILDENDGDWKSHATAIAQSIHLIKRRLQWEKLKVRLDMLSFQLAKEDLWDDPVRAGKISREHGSLLGKMKEVNALEQELLEHIDMIKLAREENDADLESESLKALLNMRRDAKEKELEALLAGEQDSCSCYIEVQAGAGGTESMDWASMVMQMYKSWAQRRGYKVTLMDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNAQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFIFSYLSASLDKDDDA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00984 476 Gene3D - 233 462 - -
Lapu6g00984 476 FunFam Peptide chain release factor 1 332 425 - -
Lapu6g00984 476 Hamap Peptide chain release factor 2 [prfB]. 106 470 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lapu6g00984 476 Gene3D - 329 425 - -
Lapu6g00984 476 Pfam PCRF domain 135 323 IPR005139 GO:0006415
Lapu6g00984 476 NCBIfam peptide chain release factor 2 116 466 IPR004374 GO:0005737|GO:0006415|GO:0016149
Lapu6g00984 476 Gene3D Release factor 109 219 - -
Lapu6g00984 476 SMART PCRF_a_2 188 298 IPR005139 GO:0006415
Lapu6g00984 476 Pfam RF-1 domain 335 442 IPR000352 GO:0003747|GO:0006415
Lapu6g00984 476 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 349 365 IPR000352 GO:0003747|GO:0006415
Lapu6g00984 476 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 108 467 - -
Lapu6g00984 476 Coils Coil 173 193 - -
Lapu6g00984 476 Coils Coil 392 412 - -
Lapu6g00984 476 SUPERFAMILY Release factor 133 469 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00984 Lapu-Chr6 10000313 10003257 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00984 K02836 - gmx:100797427 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00984 6 10000313 10003257 Lapu6g00984 6 10000313 10003257 ECH