Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00979 ATGGCAATGACATTTGAAACGGGCCGTTTTCACCTATCGCGCCCAACCGCCTCAAAGCACTTGTTATTCTCCGCCAGTATCAAACGACCAAAACCTGTTTCGCTTCCTTCTTCTCGATTCTTCCATTGCCGATTGAAACGCCTCGTTTTGACGCCGAGATTCGCAGTGAAAGCCTGCGCGGTGAACGTCGAGCAGAAGAACGTCACTGCGGAATCAGGAGAGTGGGGGAAGGTTTCCGCGGTGCTCTTCGACATGGACGGCGTGCTTTGCAACAGCGAAGAGCCTTCTAGAAAAGCAGGCGTCGATTTGTTTGCCGAGATGGGCATCGAAGTCACCGTCGACGATTTTGTGCCGTTTACGGGAACCGGAGAAGCCAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTTTGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCCCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCCGCTTCTGGTTTACCACTGTCAATGTTCGATGCGATTGTCTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTGGCTGCATCAAGAATATTGGATGTGCCCCCTTGTGAGTGTATTGTTATAGAAGATGCACTAGCTGGAGTGCAAGCTGCCAAAGCTGCACAAATGAGGTGCATAGCTGTAAGGACCTCATTATCAGATGAGGTTCTGGAATCTGCCCAGCCAACATTTATCCGGGATGACATAGGAACTGTTTCACTTGAGGATATTCTCTTTGGTGGCTCTGTTGGATATAATGAGAGGATGCAGGGCTCTAAAACACTAAATAATTTTGCAGAGTCTTCATCTGATGTGCTTGCTGGAGGGTTGCAGGGTTCTCGGCGAGATATACTTAGATTTGGAAGTCTGGGCATTGCTATCTCTTGCCTTATCTTCACCTTAAGTAACTGGAAGGCAATGCAGTATGCTTCACCGAAAGCAGTTTGGAATCAGTTGTTTGGTGTTACCCAGCCACCCTTAGAGCAGAAAGAAGATAACTCAAGATATGATAGGATCCAGCAATTTGTAAACTACATATCTGACCTGGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAGTTGTATTGCTGGATTTCTGGACCTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACCTAGATGCTTTGGAGAAAAAATACAAAGATATGCCGTTTGTTGTTGTGGGTGTTCATTCTGCAAAGTTTGATAACGAGAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGAATTTCTCACCCGGTTGTCAATGACGGAGACATGTTTCTTTGGAGGAATTTGGGTATAAATTCATGGCCAACATTTGCTATAGTTGGCCCCAATGGTAAGCTTCTTGCACAACTAGCAGGAGAAGGTCACAAGAAGGATCTAGATGATTTTGTGGAGGCTGCACTTCTATTTTATGGAAAGCAGAACATGCTGAACAATACGCAAATTTCCCTGAGTTTGGAGAAAGATAATGATCCACGCCTGTCAACCTCTCCATTAAAGTTTCCTGGAAAGCTAGCAGTTGATGTTCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAATCGCATAGTGGTTACTGACCTTGATGGAAATTTTATTGTACAAATTGGGAGCAGTGGGGAGGAAGGTTTGCAGGATGGTTCCTTTGATGATGCTACTTTTAACCGTCCTCAGGGCCTTGCTTATAATGCAAAGAAAAACATCCTTTACGTTGCAGACACAGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAATGAGAAAGTGCGGACCCTTGCTGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGTGACAAACAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTTGAAGAAAAAATTTATATTGCTATGGCTGGCCAACATCAGATTTGGGAGCACAATTTATTGGAGGCAACTTCGAGAGCCTTTAGTGGTGATGGCTATGAAAGAAATTTGAATGGATCAAGTTCTACAAACACGTCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGATCTAAGCAAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTGGATCTGAAAACAGGAGGATCTCAGTTGTTAGCTGGTGGTGACCCAATGTTCGCTGAGAATTTGTTTAAGTTTGGAGATCACGATGGAATAGGGTCTGATGTCCTTCTTCAACATCCATTGGGGGTTATGTGTGGAAATGATGGTGAAATTTATATCGCTGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAACACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAATGGCTGTAAAAGCTCAGCTCTCTGAACCGGCAGGAATTATTGAAGGGAACAAGGGGAGATTATTTATAGCTGACACAAACAACAGCTTAATTCGATATCTTGATTTAAACGCTGATGAAACTGAACTCCGTACCTTGGAGCTTAAAGGAATTCAGCCTCCCAAACCAAAATCAAAATCTTTTAAACGTCTTAGACGACGAGCGTCAGCCGACACTGTGCCAATTACGATTGATGCCATTTCATCAAATGAGGGAAACTTGTTTATTAAAATATCATTACCAAGCGAGTATCATTTCTCAAAGGAAGCACGCAGTAAATTCAGCGTGGATATTGAACCTGAAGATGCTGTGAATATTGAACCCCTCGATGGATTCCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAATGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTTTATATCAGTCTCTGCTGTTTGAGGTCCCCTTCCGAGAGGGAGTTTCTAGCCCTGCCAAAGCAGACGTCACTCTTTCACATTTTGTGAAACCCAAAACTTCAACCAGCAGCTTACTGCAGACAGTTGCCCCGTGA 3201 0.4296 MAMTFETGRFHLSRPTASKHLLFSASIKRPKPVSLPSSRFFHCRLKRLVLTPRFAVKACAVNVEQKNVTAESGEWGKVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGIEVTVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKFAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAASGLPLSMFDAIVSADAFENLKPAPDIFLAASRILDVPPCECIVIEDALAGVQAAKAAQMRCIAVRTSLSDEVLESAQPTFIRDDIGTVSLEDILFGGSVGYNERMQGSKTLNNFAESSSDVLAGGLQGSRRDILRFGSLGIAISCLIFTLSNWKAMQYASPKAVWNQLFGVTQPPLEQKEDNSRYDRIQQFVNYISDLESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLDALEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGINSWPTFAIVGPNGKLLAQLAGEGHKKDLDDFVEAALLFYGKQNMLNNTQISLSLEKDNDPRLSTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLQDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGDKQLLNSPWDVCFHPFEEKIYIAMAGQHQIWEHNLLEATSRAFSGDGYERNLNGSSSTNTSFAQPSGLSLSQDLSKIYIADSESSSIRAVDLKTGGSQLLAGGDPMFAENLFKFGDHDGIGSDVLLQHPLGVMCGNDGEIYIADSYNHKIKKLDPTSKRVNTIAGTGKAGFKDGMAVKAQLSEPAGIIEGNKGRLFIADTNNSLIRYLDLNADETELRTLELKGIQPPKPKSKSFKRLRRRASADTVPITIDAISSNEGNLFIKISLPSEYHFSKEARSKFSVDIEPEDAVNIEPLDGFLSPEGSATLHFKRSSNSASMGRINCKVYYCKEDEVCLYQSLLFEVPFREGVSSPAKADVTLSHFVKPKTSTSSLLQTVAP* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00979 1066 NCBIfam HAD-IA family hydrolase 206 264 IPR006439 -
Lapu6g00979 1066 SUPERFAMILY NHL repeat 574 898 - -
Lapu6g00979 1066 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 104 1063 - -
Lapu6g00979 1066 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Lapu6g00979 1066 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Lapu6g00979 1066 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Lapu6g00979 1066 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Lapu6g00979 1066 ProSiteProfiles NHL repeat profile. 813 843 IPR001258 GO:0005515
Lapu6g00979 1066 Pfam Thioredoxin-like 430 524 IPR012336 -
Lapu6g00979 1066 Coils Coil 1065 1066 - -
Lapu6g00979 1066 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Lapu6g00979 1066 FunFam Chloroplast protein HCF243 793 897 - -
Lapu6g00979 1066 SUPERFAMILY HAD-like 74 290 IPR036412 -
Lapu6g00979 1066 CDD HAD_BPGM-like 80 266 - -
Lapu6g00979 1066 SUPERFAMILY Thioredoxin-like 405 543 IPR036249 -
Lapu6g00979 1066 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 285 - -
Lapu6g00979 1066 Gene3D - 80 271 IPR023214 -
Lapu6g00979 1066 FunFam NHL repeat-containing protein 2 562 718 - -
Lapu6g00979 1066 Pfam NHL repeat 633 658 IPR001258 GO:0005515
Lapu6g00979 1066 CDD NHL-2_like 615 956 IPR045302 -
Lapu6g00979 1066 FunFam NHL repeat-containing protein 2 385 549 - -
Lapu6g00979 1066 ProSiteProfiles Thioredoxin domain profile. 401 547 IPR013766 -
Lapu6g00979 1066 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Lapu6g00979 1066 Gene3D - 548 720 IPR011042 -
Lapu6g00979 1066 Gene3D - 792 895 IPR011042 -
Lapu6g00979 1066 SFLD Haloacid Dehalogenase 77 285 - -
Lapu6g00979 1066 Gene3D Glutaredoxin 378 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00979 Lapu-Chr6 9923143 9944147 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00979 - - gmx:100795843 1952.95