Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00935 ATGGCTTCAACTATGCTTCCCCTTGCAACCTTCTTCTTACTTCTCTCCGTTTCTTATCTCCAGATTGCTGAGGCGGAAGCTGAACCGTTGACCACTCTCAAGCTTAATTCTCCAATTCTTCAGGTTTTTAACCTTGTGATGCAGAAATCTATCGCTAAACAGATTAACGAAAATCCTGAGGCAGGATGGGAGGCTGCTATAAGTCCTCGTTTCTCCAATTATACAATTGGACAATTTAAGCGCCTTCTTGGTGTCAAACAAACGCCTAAGAATGAACTCAGAAGTATACCCGTTATTTCTCATCCAAAGTCATTGAAATTGCCAGAGAATTTTGATGCAAGGACAGCTTGGTCGCGGTGTAGCACTATTGGAAGAATTCTAGATCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCTGATCGCTTTTGCATTCATTTTGATGTTAATATTTCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGGTGTGACGGGGGATATCCCTTGTCCGCATGGCGATACTTATCCCACCACGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAATTGGCTGCTCTCATCCTGGTTGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAGAAATGTGTAGATGGGAACCAGCTATGGAAGAAGTCAAAGCACTTTAGTGTCAATGCCTACAATGTCAACTCTAATCCCCATGATATCATGGCAGAAGTGTACAAAAATGGGCCAGTTGAGGTCGCATTTACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACGTCACAGGTTATGCACTAGGAGGTCATGCAGTGAAGCTAATTGGGTGGGGAACAACTGATGATGGGGATGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTATTTCAAGATCCGGAGGGGGACAAACGAATGTGGGATTGAAGAGGAGGTGACTGCTGGTTTGCCTTCTACCAAAAATCTCGTTAGAGAGGTGACTGATGTGGATGCTGACGCTGCTGTTTCATTCTGA 1092 0.4414 MASTMLPLATFFLLLSVSYLQIAEAEAEPLTTLKLNSPILQVFNLVMQKSIAKQINENPEAGWEAAISPRFSNYTIGQFKRLLGVKQTPKNELRSIPVISHPKSLKLPENFDARTAWSRCSTIGRILDQGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLSAWRYLSHHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVDGNQLWKKSKHFSVNAYNVNSNPHDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYALGGHAVKLIGWGTTDDGDDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNLVREVTDVDADAAVSF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00935 363 Pfam Peptidase family C1 propeptide 48 89 IPR012599 GO:0004197|GO:0050790
Lapu6g00935 363 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 64 335 IPR013128 GO:0008234
Lapu6g00935 363 CDD Peptidase_C1A_CathepsinB 108 341 - -
Lapu6g00935 363 Gene3D Cysteine proteinases 42 349 - -
Lapu6g00935 363 SUPERFAMILY Cysteine proteinases 51 343 IPR038765 -
Lapu6g00935 363 PRINTS Papain cysteine protease (C1) family signature 129 144 IPR000668 GO:0006508|GO:0008234
Lapu6g00935 363 PRINTS Papain cysteine protease (C1) family signature 306 312 IPR000668 GO:0006508|GO:0008234
Lapu6g00935 363 PRINTS Papain cysteine protease (C1) family signature 290 300 IPR000668 GO:0006508|GO:0008234
Lapu6g00935 363 Pfam Papain family cysteine protease 107 341 IPR000668 GO:0006508|GO:0008234
Lapu6g00935 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 129 140 IPR000169 -
Lapu6g00935 363 FunFam cathepsin B-like protease 2 41 348 - -
Lapu6g00935 363 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 288 298 IPR025660 -
Lapu6g00935 363 SMART pept_c1 107 342 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00935 Lapu-Chr6 9527646 9534007 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00935 K01363 - gmx:100788988 679.093