Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00880 ATGGGTACGGAGAGAAAGAGAAAGGTGAGCTTGTTCGATGTGGTAGACGATTCTGTGGCGAAGATGGCGAAATCCAATGGCGGCGCCAATAACAGCGTTGCCAATGCTCTCATCAATCGCTGGAACGCTAGGCCTTACTCTCAAAGGTACTTCGAGATTTTGGAGAAGAGAAAAACCCTCCCTGTTTGGCACCAGAAGGAAGAGTTCTTACACGTTCTCAAAGATAACCAGACCTTGATTCTTGTCGGTGAAACTGGTAGTGGCAAAACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGAGTTAGAGACACCGGATAAACGTAGGAAGATGATGATTGCGTGCACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCCCGTCGTGTTGCTGAAGAGATGGACGTAACTATTGGGGAAGAGGTTGGTTATAGTATCAGATTTGAAGACTGCAGTAGTGCGAGGACAGTTTTGAATCTCACAAGTGGAGGTGCTTTGTTTCACAGGTATCTAACTGATGGTATGCTCTTAAGGGAAGCAATGACAGATCCGCTTTTGGAAAGGTACAAGGTTATTATTCTTGATGAGGCTCACGAGAGGACTTTGGCCACTGATGTGTTATTTGGCCTTCTGAAAGAAGTGCTTAAAAATAGACCTGACTTGAAATTGGTTGTTATGAGTGCTACTCTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACTCAGGAACCTGAAAGGGATTACTTGGAGGCTGGCATTAGGACAGTGGTACAGATACACATGTGTGAACCACCTGGAGACATACTTGTATTTCTTACTGGAGAAGAAGAGATAGAAGATGCTTGCCGCAAAATAACAAAAGAAATTTCTAATCTGGGAGATCAGGTGGGCCCTATCAAAGTGGTACCCCTGTATTCTACCCTTCCTCCAGCTATGCAGCAGAAGATTTTTGAGCCACCGCCACCTCCTCTGAAGGAGGGTGGACCTGCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGTATTGTTTATGTCATTGACCCCGGTTTTGCTAAGCAGAAGGTTTATAATCCACGAGTTCGTGTGGAGTCTTTATTAGTATCACCAATTTCAAAAGCTAGTGCACATCAGAGATCTGGACGTGCTGGAAGAACTCAACCAGGGAAATGCTTTAGACTTTACACGGAAAGAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAAATTTTAAGATCAAATCTTGCCAATACAGTTCTTACTTTGAAGAAACTGGGCATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCTTTGGATGATGATGGTAACTTAACAAAGCTGGGTGAGATTATGAGTGAATTTCCTTTGGATCCACAGATGTCAAAGATGCTCGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTTTCAGTTGAGTGTGTCCTGTTAGGTTGTCATCAGCAACTGTCTTCTCTGGGTTCCATGCCCCCGGTTGGCATGCACCATAGGATTCTTATACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTCGGGCACATTGATGGAGATCATCTCACGTTGTTGAATGTCTATCACGCTTACAAGCAAAATAATGAGGATCCCTCTTGGTGCTACGATAACTTTGTTAATCATAGGGCATTGAAAGCAGCTGATAATGTTAGACAACAATTAGTGCGTATCATGGCCCGGTTTAATCTGAAGCAGTGCAGCACGGACTTTAATAGCCGTGATTACTATGTCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCTCACCTGGAGCGTACAGGACACTACTTGACGGTAAAAGACAACCAGGTGGTGCATTTGCATCCATCAAATTGTCTGGACCATAAGCCTGAATGGGTAATTTATAATGAATATGTCCTTACCAGTCGGAATTTTATTCGTACTGTTACAGACATACGAGGGGAATGGTTGGTTGATATAGCTCCACATTACTATGATTTGTCTAATTTCCCCCAATGTGAGGCAAAGCGTGTTCTAGAGAAACTTTACAAGAAGCGAGAAAAGGATAAGGAGGAAATCAGGAGCCGCAGATAA 2289 0.4356 MGTERKRKVSLFDVVDDSVAKMAKSNGGANNSVANALINRWNARPYSQRYFEILEKRKTLPVWHQKEEFLHVLKDNQTLILVGETGSGKTTQIPQFVLDAVELETPDKRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLNLTSGGALFHRYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISNLGDQVGPIKVVPLYSTLPPAMQQKIFEPPPPPLKEGGPAGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVECVLLGCHQQLSSLGSMPPVGMHHRILIPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKAADNVRQQLVRIMARFNLKQCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKDKEEIRSRR* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00880 762 PANTHER ATP-DEPENDENT RNA HELICASE 47 734 - -
Lapu6g00880 762 Gene3D - 252 434 IPR027417 -
Lapu6g00880 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 274 454 IPR001650 -
Lapu6g00880 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 249 IPR014001 -
Lapu6g00880 762 Pfam DEAD/DEAH box helicase 67 234 IPR011545 GO:0003676|GO:0005524
Lapu6g00880 762 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 252 434 - -
Lapu6g00880 762 Pfam Helicase conserved C-terminal domain 280 412 IPR001650 -
Lapu6g00880 762 SMART ultradead3 57 258 IPR014001 -
Lapu6g00880 762 Gene3D - 9 251 IPR027417 -
Lapu6g00880 762 Pfam Helicase associated domain (HA2) 475 591 IPR007502 GO:0004386
Lapu6g00880 762 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 458 549 - -
Lapu6g00880 762 Gene3D - 458 642 - -
Lapu6g00880 762 SMART helicmild6 295 413 IPR001650 -
Lapu6g00880 762 FunFam Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 14 251 - -
Lapu6g00880 762 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 653 729 IPR011709 -
Lapu6g00880 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 644 IPR027417 -
Lapu6g00880 762 CDD SF2_C_RHA 253 421 - -
Lapu6g00880 762 CDD DEXHc_DHX15 48 248 IPR044756 GO:0003724|GO:0005524
Lapu6g00880 762 SMART ha2_5 474 592 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00880 Lapu-Chr6 9020039 9025226 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00880 K12820 - gmx:100817506 1366.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00880 6 9020039 9025226 Lapu6g00880 6 9020039 9025226 ECH