LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu6g00859	ATGGGTCCTTCTCGTCGCAGCAGCAATGGTAGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCCTTCTTCACCAAATCCCCCTCCCCCTCTCCCACGCTCGCCAAAACCACCCAAAACCCAAACCCTAACCTCGCTTCAGATCATAACCCTAAACCTAACCCCAGTTCCACGCCTCTCACTCCCTCACCTCTCAATCCCAAACCCAACAAATCCCTTCTTGTAATCGGCGCTTCCATTTCTCCACCCTCCGCTTCGTCTTCTCTCTACGGTCAAGAAGTCGTTGGGCGAAGGATCAAGGTTTATTGGCCTTTAGACAAAGCCTGGTACGAAGGTTCCATCAAATCCTTCGATAAAATCACCTCCAAGCACGTGGTTCGTTACTGCGATGACGAAGAGGAATCGCTCAACCTCTCCAAGGAGAAGATCGAGTGGCTCCAGGAGTCCTCCACGAAGAAACTTAAGCGCTTGCGTCGCGGATTCTCCGACATTAGGAAGATGGAGATTGACGAGGATGATGTAAAAGAAGAAAGCCACAAAGGAGAAGAAGAAGAACATGATGATGTTAACGATGATGATGTTAACGATGATGATGATTCCAATGACGAGGATTGGGGGAAGAATGCTGCATCGTTGGAGGATGCTGGGGATGGGGAAGAAGATACGGATTTAGAGGACGAAGAGGACTTGGCAGGGAGTTCTAAATGCAAAAGGGTTGACGCTAAAAAGCGGAAACTAAGTGCAACAGAGAAACTAGAACCTGCGAAAAAGAGCAAGAGCGGAGTGGAAGTTTGGAAAGGGACTTTCAAGCTCTCAGTGTTGGAGCCTACTACTAATTTGGAGATGAAAAAGACATCTAGTGGTACTGACAATGTTTCATTTACCGAGACGGCTGAAAGATTTGCATCTCGCGAAGCTCAGAAACTGCGCTTCCTGAAAGTAGATCGCAGGGATGCCAAGCGAAGACGACCAGGGGATGAAAATTATGATTCAAGAACTCTCTACTTACCTCCCGATTTCTTAAGGAATTTGTCTGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTGTCGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAACTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCAGAGAAGAACTTCTCAATTAACGTGGAGAAACTGGCTAGGAAGGGTTACCGAGTTCTTGTTGTGGAGCAGACTGAAACTCCTGAACAGCTGGAGCTTCGTCGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCAGTGGTAACTAAAGGTACATTAACGGATGGGGAGTTGCTGTCTGCAAACCCTGAAGCTGCATATTTAATGGCCCTGACTGAGCATCATGAAAATCCTGCAAATGAAATTTCAGAGCATATCTATGGTGTTTGCATAGTTGATGTTGCCACAAGTAGAGTCATTCTTGGACAGTTTGAGGATGACTTGGACTGCAGCGCCTTGTGCTCTATCTTATCTGAGATCAGGCCTGTTGAAATTGTAAAACCAGCCAAACTACTCAGTACTGAAACGGAGAGAGCTCTGCTGAAGCATACCAGAAACCCTCTTGTGAATGAACTAGTTCCAGGTGTGGAATTCTGGGACGCTGGCAAAACTATGGATCATTTGAAGCAAATTTATGGGAACACTAGTGATGTTAGTGTTGAAGATAATGGGTTAGACTGCCTGCCAGATGTCTTACAGGAGTTGGTGAAAAGAGGTGACAATAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAAACAGGCTTTTCTGGATGAGAGATTGCTTAGATTTGCACAGTTTGAGATACTTCCGTGTTCTGGTTTTGGCGATCTTGCTTCAAAACACTACATGGTTCTTGATGTGGCTGCTTTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCTGGCACGCTCTATGCCCAACTAAACCAATGTGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTCATGTGCAGTCTATTAGGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCATCTGCACTAGAATTTCGGAAAGCATTATCCAAGCTCCCTGACATGGAGCGATTGCTTGCACGCATATTTTCCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTGATTCTGTATGAGGATGCAGCTAAGAAACAACTACAAGAGTTTATTGCAGCTCTGCGTGGCTGTGAACAGATGTCACAAGCGTGCTCTTCGCTTGGTGTCATTTTGAATCATGTCCAATCTAGACAACTTCATCATCTGTTAACACCAGGTAAAGCTCTTCCTGATGTTTGTATGGATCTTAATCATTTCAAAGATGCCTTTGATTGGGTGGAAGCCAATTGCTCTGGGCGTATAATACCTCGTGAAGGAGTTGACACAGAGTATGCCTCAGCCTGTAAGGCAGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTCAAGGAGCAAAGGGAACTACTTGGAGACACATCAATTGCTTATGTCAATGTTGGAAAGGATGTGTACCTATTGGAAGTGCCAGAAAATTTGTCTACGAATATTCCTCGGGATTATGAATTGCGTTCATCAAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATTAAAATTTATTTAAAAGAACTCTCTCAAGCTGAACTGGAAAAGGAGTCCTTGTTGAAAAATACTTTACAGAGATTGATTGGGCGCTTTTGTGAAAACCACACTAAGTGGAAGCAATTGGTCTCTGCAACTGCAGAACTGGATCTGTTGATCAGTTTAGCTATAGCTGGTGACTACTATGAAGGACCAACATGCAGACCCACTTTCGTTGGTACATTATGTACAAAAGAAGCTCCTTACCTCCACGCTAAAAGTTTGGGACACCCTGTCCTTAGGAGTGATACCTTAGGCAAGGGTGCGTTTGTACCCAATGACCTAACGATTGGTGGTTCAGATCATGCCAACTTTATCCTTCTAACAGGTCCTAACATGGGTGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACCGTGATTTTGGCCCAGGTTGGAGCTGATGTCCCAGCAGAAAGTTTTGATTTGTCGCCTGTTGATCGTATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCTGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCATCGGCCACTCGTAACTCATTGGTGGCTTTGGATGAGCTTGGGCGAGGAACTGCAACTTCTGATGGACAAGCCATTGCGGAATCAGTATTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCATTATCATCGATTAGCTGTAGATTATCTCAAAGATCCCAAGGTCTGTCTCAGCCACATGGCATGCCAAGTTGGTTGTGGAATTGCAGGTTTAGACGAGGTCACCTTTCTTTACAGGCTTACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTGCTTCAGAGAGCTGCTTCCAAGTCTAGAGAATTTGAGGCCAGTTATGGTAAATGCAGAAAGGTGTCTTCTGAAACAGACTCTCCCAATAAAAGTTGGGTTGACGAGGTAGCAGCCATCATACAAAAATTGATCAAAGTTTCTACCAATTTGAGTTGCCAGGAAACCATTTGCGTTGGTTCCCTAAGGGAACTTCAGGATAAAGCACGAGAATCGATGCAGCGATGTTAA	3879	0.4447	MGPSRRSSNGRSPLVNQQRQITSFFTKSPSPSPTLAKTTQNPNPNLASDHNPKPNPSSTPLTPSPLNPKPNKSLLVIGASISPPSASSSLYGQEVVGRRIKVYWPLDKAWYEGSIKSFDKITSKHVVRYCDDEEESLNLSKEKIEWLQESSTKKLKRLRRGFSDIRKMEIDEDDVKEESHKGEEEEHDDVNDDDVNDDDDSNDEDWGKNAASLEDAGDGEEDTDLEDEEDLAGSSKCKRVDAKKRKLSATEKLEPAKKSKSGVEVWKGTFKLSVLEPTTNLEMKKTSSGTDNVSFTETAERFASREAQKLRFLKVDRRDAKRRRPGDENYDSRTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVSFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSINVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEHHENPANEISEHIYGVCIVDVATSRVILGQFEDDLDCSALCSILSEIRPVEIVKPAKLLSTETERALLKHTRNPLVNELVPGVEFWDAGKTMDHLKQIYGNTSDVSVEDNGLDCLPDVLQELVKRGDNSRSALSALGGALYYLKQAFLDERLLRFAQFEILPCSGFGDLASKHYMVLDVAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVQSIRERQEAVAGLKGVNLPSALEFRKALSKLPDMERLLARIFSSSEASGRNANKVILYEDAAKKQLQEFIAALRGCEQMSQACSSLGVILNHVQSRQLHHLLTPGKALPDVCMDLNHFKDAFDWVEANCSGRIIPREGVDTEYASACKAVKEIESSLLKHLKEQRELLGDTSIAYVNVGKDVYLLEVPENLSTNIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELEKESLLKNTLQRLIGRFCENHTKWKQLVSATAELDLLISLAIAGDYYEGPTCRPTFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKGAFVPNDLTIGGSDHANFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAVDYLKDPKVCLSHMACQVGCGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQRAASKSREFEASYGKCRKVSSETDSPNKSWVDEVAAIIQKLIKVSTNLSCQETICVGSLRELQDKARESMQRC*	1293

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu6g00859	1292	SUPERFAMILY	DNA repair protein MutS, domain II	456	624	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Pfam	MutS domain I	349	461	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Pfam	MutS domain V	1038	1228	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Pfam	MutS domain III	659	974	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	MobiDBLite	consensus disorder prediction	1	73	-	-
Lapu6g00859	1292	PIRSF	Msh6	2	1274	IPR017261	GO:0006298\|GO:0030983
Lapu6g00859	1292	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	349	1242	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Lapu6g00859	1292	FunFam	DNA mismatch repair protein	819	950	-	-
Lapu6g00859	1292	SMART	mutATP5	1034	1226	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	MobiDBLite	consensus disorder prediction	169	186	-	-
Lapu6g00859	1292	MobiDBLite	consensus disorder prediction	169	260	-	-
Lapu6g00859	1292	SMART	TUDOR_7	92	150	IPR002999	-
Lapu6g00859	1292	CDD	Tudor_Agenet_AtEML-like	96	146	-	-
Lapu6g00859	1292	FunFam	DNA mismatch repair protein	985	1261	-	-
Lapu6g00859	1292	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	997	1229	IPR027417	-
Lapu6g00859	1292	SUPERFAMILY	DNA repair protein MutS, domain I	334	457	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Pfam	MutS family domain IV	843	932	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Coils	Coil	921	941	-	-
Lapu6g00859	1292	Gene3D	-	819	950	-	-
Lapu6g00859	1292	FunFam	DNA mismatch repair protein	303	466	-	-
Lapu6g00859	1292	SMART	DNAend	673	1014	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Gene3D	-	93	146	-	-
Lapu6g00859	1292	MobiDBLite	consensus disorder prediction	187	204	-	-
Lapu6g00859	1292	Gene3D	-	653	974	-	-
Lapu6g00859	1292	SUPERFAMILY	DNA repair protein MutS, domain III	656	977	IPR036187	-
Lapu6g00859	1292	Pfam	MutS domain II	472	625	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	MobiDBLite	consensus disorder prediction	230	260	-	-
Lapu6g00859	1292	Gene3D	MutS, connector domain	470	649	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Lapu6g00859	1292	Gene3D	-	985	1263	IPR027417	-
Lapu6g00859	1292	MobiDBLite	consensus disorder prediction	1	55	-	-
Lapu6g00859	1292	Gene3D	DNA repair protein MutS, domain I	304	465	IPR016151	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu6g00859	Lapu-Chr6	8785513	8794095	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu6g00859	K08737		-	gmx:100811104	2113.19

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu6g00859	6	8785513	8794095	Lapu6g00859	6	8785513	8794095	ECH