Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00834 ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCCTGCAAGCTGTGGAGAGGGGACGGAAGTGGAAGATTCGACTGTAGTCTTCTTTCCTGCGCGTGGAAAGCTCCGAGGGTTCTCACCGGCTTTCTTGCGAGCACTGCTCATCCTCACCACTGTTCGGACTTGTCCAATGGGCGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCCTTTAGTGTAGGTGGTTCATGTCCCGATGAACCACTTGATATTGTACTTTTCGAAGGATTGTCTAGATCAAACATGTCTCAAGTTGCTCCTAGAAGATGGCAATTATGTTGTTCTTCAGCCTTCCCTTCGAACACTGCCACTGAGTTTTCCCCAAAAAGTTTGTGGGAGGATCTTAAACCTGCTATCTCGTACCTGTCTTCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTTGAGGTTGCACGTATTCTTGGAGAACTTGAACTCGATTGGGAGTCAATTGCTGCCGGGTTACTTCATGATACAGTTGAGGATACAAATGTTGTTACCTTTGAGAGAATAGAGGAGGAGTTTGGTGCTACTGTGCGCCACATTGTGGAAGGAGAGACCAAGGTGTCAAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCTGTTCAAGATGTGAAAGCAGAAGATCTTCGACAGATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTGGCGAAGTTGCTTGGAATGTATCAAATTAAGTCAGAACTAGAAAATCTGTCATTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATATTAATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTTAAAACTGAAGTCCGTTCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCAGTTCTCAAATCGAAAAGTTCAATCAGTGAGATTAACCAAATTGCACAGCTTCGTATTATTATTAAACCTAAGACATGCGTTGGGGTTGGGCCATTATGCAATCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTACATTGCAACCCCCAAACCAAATGGCTACCAGAGTCTGCATACCACTGTGATTCCATTTTTGTACGAAAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCCCATTATAGTGGGAGAGAATTTGTCACTGGCTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGTTCAAGAGGGAAGACAGTTTGTCTTAACAACGCCAATATTGCTCTCAGAATTGGTTGGCTCAATGCAATTAGAGAATGGCAAGAAGAGTTCGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGAGATCTGCTGGGTAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGATTATGCTTATATGATACACACTGAAATAGGGAACAAGATGGTAGCTGCAAAGGTCAATGGAAATCTTGTTTCTCCTACACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAAAGGCATAAACAGTGGTTGCAACATGCTAAAACACGAAGTGCTAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCGGCTTCTGATATCACTACGGAAGCAGTCAATGACTTTGTTACCGATTCCGATGGGGATAGTGAATCTGAAGAACTATCAAAAGGTTCCAGTGGTTCCAAATATACGTGGGGTAAAAATTTTGTGAATGGAGAGGAAATATCAACTTCGGGAAGAAGTGAGACTGTCCTCCAAAGTAAGAATGGAAGTGTTTGGATTCCCAAGGTCAACGGCAAACATAATAAGCATGTGCAGCATGAAAATTTCAACGGCAAAGGGGAGATGTTACTGCAGGGAAACCTTGTAGCCAAGATGATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAGAGGCATGATGGCTGAGGTCACTACAGCATTGTCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCGGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTAGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTGATATTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGGCGTTCTCGAATGCTAG 2655 0.4264 MASASSMSVSLECVNACKLWRGDGSGRFDCSLLSCAWKAPRVLTGFLASTAHPHHCSDLSNGRNGRRNRYNFGCEAFSVGGSCPDEPLDIVLFEGLSRSNMSQVAPRRWQLCCSSAFPSNTATEFSPKSLWEDLKPAISYLSSKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKILMKKIQDDQFLDLLTVKTEVRSVCKEPYSIYKAVLKSKSSISEINQIAQLRIIIKPKTCVGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVTDSDGDSESEELSKGSSGSKYTWGKNFVNGEEISTSGRSETVLQSKNGSVWIPKVNGKHNKHVQHENFNGKGEMLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGMMAEVTTALSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00834 884 CDD TGS_RSH 566 624 IPR033655 -
Lapu6g00834 884 FunFam GTP pyrophosphokinase (RelA/SpoT) 557 631 - -
Lapu6g00834 884 SUPERFAMILY ACT-like 797 856 IPR045865 -
Lapu6g00834 884 ProSiteProfiles TGS domain profile. 561 624 IPR004095 -
Lapu6g00834 884 Gene3D - 558 633 IPR012675 -
Lapu6g00834 884 Gene3D Hypothetical protein af1432 129 324 - -
Lapu6g00834 884 SUPERFAMILY HD-domain/PDEase-like 136 324 - -
Lapu6g00834 884 PANTHER GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED 7 878 - -
Lapu6g00834 884 SMART RelA_SpoT_2 378 500 IPR007685 GO:0015969
Lapu6g00834 884 Pfam TGS domain 565 624 IPR004095 -
Lapu6g00834 884 Pfam Region found in RelA / SpoT proteins 378 494 IPR007685 GO:0015969
Lapu6g00834 884 CDD NT_Rel-Spo_like 368 488 IPR007685 GO:0015969
Lapu6g00834 884 Gene3D - 797 863 - -
Lapu6g00834 884 SUPERFAMILY Nucleotidyltransferase 328 498 IPR043519 -
Lapu6g00834 884 ProSiteProfiles ACT domain profile. 797 868 IPR002912 -
Lapu6g00834 884 FunFam GTP pyrophosphokinase RelA 130 325 - -
Lapu6g00834 884 SUPERFAMILY TGS-like 552 624 IPR012676 -
Lapu6g00834 884 ProSiteProfiles HD domain profile. 171 278 IPR006674 -
Lapu6g00834 884 MobiDBLite consensus disorder prediction 676 695 - -
Lapu6g00834 884 CDD HDc 169 300 IPR003607 -
Lapu6g00834 884 SMART hd_13 167 287 IPR003607 -
Lapu6g00834 884 Gene3D Beta Polymerase, domain 2 326 480 IPR043519 -
Lapu6g00834 884 Pfam HD domain 152 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00834 Lapu-Chr6 8578122 8586490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00834 181 496 EF-hand Containing Proteins AT3G17470 30.675 1.43e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00834 K00951 - gmx:100814134 1648.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00834 6 8578122 8586490 Lapu6g00834 6 8578122 8586490 ECH