Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00832 ATGACTTTTTCCCTCTTTTCTTGTCTCCTTTTCCTTCTTTCTGCCTTTTTCACCCTTTGTCACTCCCTCACTCCCCATTCCCACCACCACCCTCACTCTGCCTTACACAACTACAGAGATGCTCTCGCAAAATCCATCATCTTCTTTGAGGGCCAGAGGTCAGGCAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGGGACTCTGCTCTCTCTGATGGCTCCGCCATGAATGTTGATTTGGTTGGAGGGTACTACGATGCTGGGGACAACGTCAAGTTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCTTGGAGTGTTATTGAGTTTGGTGGGGTGATGAAAGGTGAGTTGCAGAATGCCAGAGAAGCCATTCGTTGGGGCACAGATTATCTTCTTAAAGCTACTGCTCATCCAGACACCATTTATGTCCAGGTGGGAGATGCTGAGAAGGACCACGCTTGTTGGGAGAGACCTGAGGACATGGATACCCCAAGAAGTGTTTTTAAAGTAGATAAAAACAACCCTGGTTCAGATGTGGCTGCAGAAACTGCTGCGGCTCTAGCAGCTGCTTCTCTGGCTTTCAAGAAAACTGACCCAACCTATTCCAAAACTTTGGTTAGGAGGGCTATTCGTGTTTTCCAGTTTGCTGATAAATACAGGGGATCCTACAGCAATGGCTTGAAGTCCGTTGTGTGTCCCTTCTACTGCTCCTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAAGTCAATGGACAGACCCTTGGGGCAGCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATACTACTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAATCCCTGCATGACTACAAGGGTCATGCAGACAATTTTATATGTTCTGTTATCCCTGGTTCCTCCTCTTCCCAGTTCACCCCAGGTGGACTTCTGTTCAAGATGGGTGATAGCAATATGCAATATGTGACTTCCACCTCCTTCATACTCTTAACTTACGCTAAATATTTGACCAAAGCCCATGTGGCTGTGAACTGTGGTGGAACCACAGTGACGCCAAAGAGACTACGGGCTATAGCCAAAAAGCAGGTGGATTACTTGTTAGGAGAGAACCCCTTGAAGATGTCCTACATGGTGGGGTATGGTCCACGGTATCCACGAAGGATACACCACAGGGGCTCATCGCTGCCATCCATTGGTGTTCACCCTGGCAAGATCCAATGCTCAGCAGGGTTCAGTGTGATGAATTCAGAATCACCCAATCCCAACATTCTAGTGGGTGCCGTTGTGGGAGGACCGGATCTGAAGGATCGGTTCCCTGATGAACGGTCAGATTACGAGCAATCAGAGCCTGCTACTTATATCAACGCACCTCTTGTGGGATCACTTGCTTATCTGGCACACTCCTTTGGCCAACTCTAG 1500 0.48 MTFSLFSCLLFLLSAFFTLCHSLTPHSHHHPHSALHNYRDALAKSIIFFEGQRSGKLPSNQRMSWRRDSALSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELQNAREAIRWGTDYLLKATAHPDTIYVQVGDAEKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLAFKKTDPTYSKTLVRRAIRVFQFADKYRGSYSNGLKSVVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQTLGAADSDNTFGWDNKHVGARILLSKEFLVRKVQSLHDYKGHADNFICSVIPGSSSSQFTPGGLLFKMGDSNMQYVTSTSFILLTYAKYLTKAHVAVNCGGTTVTPKRLRAIAKKQVDYLLGENPLKMSYMVGYGPRYPRRIHHRGSSLPSIGVHPGKIQCSAGFSVMNSESPNPNILVGAVVGGPDLKDRFPDERSDYEQSEPATYINAPLVGSLAYLAHSFGQL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00832 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Lapu6g00832 499 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Lapu6g00832 499 Gene3D - 35 495 IPR012341 GO:0005975
Lapu6g00832 499 FunFam Endoglucanase 34 497 - -
Lapu6g00832 499 SUPERFAMILY Six-hairpin glycosidases 36 497 IPR008928 GO:0005975
Lapu6g00832 499 Pfam Glycosyl hydrolase family 9 38 488 IPR001701 GO:0004553|GO:0005975
Lapu6g00832 499 PANTHER ENDO-1,4-BETA-GLUCANASE 11 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00832 Lapu-Chr6 8551272 8553745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00832 6 495 Glycoside Hydrolase AT1G02800 76.735 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00832 K01179 - gmx:100793900 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00832 6 8551272 8553745 Lapu6g00832 6 8551272 8553745 ECH