Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00778 ATGTACGCGCCTTTCACTTCTCTATCCGGTTACTCTGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGAATATGCGCCACGCGCCGCGACCTACTCCCTATACGACGACGTTCCACGTTCAGCCGCGTCGCTACCAAACTCGCACATCCAAGAATCGTTTGCATGGCGGAACCATATCTGATAACGAAGTTGGAATCTGCTGAGAAGACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACATTGTGTCTGATCCAAAGGAGTATCAGAAGTTAGCGCAATCAGTGTCAGAGCTTGATGAGGTTGTGTCCATCTATAGGAAATTCAAAGACTGTGAGAAGCTTCTAGAAGAAACCAAAGCTTTAGCGAAAGAAGATGGCAATGATGAGGATATGGTGGAGATGATATCTTATGAGATCGACTCGTTGTCCAAGCAGCTGGCTGAGCTTGAGGACAAGCTTAAGGTGCTGCTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGATTGAAGTACGAGCAGGCACTGGTGGTGATGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCTCGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTAATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCCCTAACAGAAACACAGGGTCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCCAAAGATATTGAACTGACGACGGCACGTTCTGGTGGTGCCGGAGGTCAGAATGTTAACAAGGTTGAAACAGCCATCGATCTCTTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACACAACTTAAAAACAAGACTCGTGCTTTTCAGTTACTCCGGGCAAAACTATATGAGATAAAGGTAAGGGAACAGCAGGAGTCATTACGAAATCAAAGGAAATCACAGGTCGGTACAGGTGCACGAGCCGAAAAAATCCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTATGAGCTCACCTCCTTTCTCGATGGTGACATAGAAGATGCTGTTCAGTCTTGCGCTACAATGGAGCAAAAAGAACTTCTTGAAGAACTTGCGGAATCTGTAGGTGCTACGGCAGGCTGA 1275 0.4525 MYAPFTSLSGYSVAMNSLTASFTARICATRRDLLPIRRRSTFSRVATKLAHPRIVCMAEPYLITKLESAEKTWKELSVKLADPDIVSDPKEYQKLAQSVSELDEVVSIYRKFKDCEKLLEETKALAKEDGNDEDMVEMISYEIDSLSKQLAELEDKLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNKTRAFQLLRAKLYEIKVREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAG* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00778 424 FunFam Peptide chain release factor 1 168 278 - -
Lapu6g00778 424 Hamap Peptide chain release factor 1 [prfA]. 62 416 IPR004373 GO:0006415|GO:0016149
Lapu6g00778 424 Coils Coil 136 156 - -
Lapu6g00778 424 FunFam Peptide chain release factor 1 278 343 - -
Lapu6g00778 424 Gene3D - 279 340 - -
Lapu6g00778 424 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 288 304 IPR000352 GO:0003747|GO:0006415
Lapu6g00778 424 Gene3D - 341 419 - -
Lapu6g00778 424 SMART PCRF_a_2 124 239 IPR005139 GO:0006415
Lapu6g00778 424 PANTHER LD18447P 57 418 - -
Lapu6g00778 424 FunFam Peptide chain release factor 1 340 419 - -
Lapu6g00778 424 Gene3D - 56 166 - -
Lapu6g00778 424 Gene3D - 168 278 - -
Lapu6g00778 424 Pfam RF-1 domain 271 381 IPR000352 GO:0003747|GO:0006415
Lapu6g00778 424 SUPERFAMILY Release factor 71 412 IPR045853 -
Lapu6g00778 424 Pfam PCRF domain 70 264 IPR005139 GO:0006415
Lapu6g00778 424 NCBIfam peptide chain release factor 1 58 417 IPR004373 GO:0006415|GO:0016149
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00778 Lapu-Chr6 8114074 8120155 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00778 K02835 - gmx:100777225 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00778 6 8114074 8120155 Lapu6g00778 6 8114074 8120155 ECH