Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00727 ATGGACGCGGGACCGTGGAATTATTCTTCCTCCAAGATCAAGTCCAGATCCTCCTTCCAGGGTCGCCTCTTCCGCACTAAGAATTCTCAAGAAAACTTGGATAGGTTTATTCCTAATCGCTCGGCGATGGATTTCGGCTACGCGCACTACATGCTCACGGAGGGCAACAAGAAGAGCAGGGAGAAAGAGAACGATGTGGTGACGTCACCATCTCGAGAAGCATACCAGAAGCAACTCGCCGAGGCTTTCAACATGAATCGGACTCGAATCTTGGCCTTCAAGAACAAACCCCCAACGCCGGTTGAACTCATTCCCAAGTGTATCCTTTCGCCTCCTCCCCCACCCAGTTCCTCTAAGCCCAGACGTTACATTCCTCAGAGTTCTGAGAGGACGTTGGATGCTCCTGATATACTGGATGACTTTTATTTGAACCTATTGGATTGGGGTAGCGGCAATGTTCTTAGTATTGCCCTTGGGAACACTGTGTATCTATGGAATGCCGATGATAGCTCCACTGCTGAACTTGTCACTGTGGATGAGGAAGATGGTCCTGTTACAAGTGTTGCCTGGGCTCCCGATGGACGCCATTTAGCCGTTGGTTTGAACAATTTTCATGTCCAGCTCTGGGATTCTCATTCTTCTAGGATGGTAAGAACATTAATAGGTGGACATCAAGCGCGAGTGGGTTCACTGGCTTGGAACAATCATATCCTCACAACAGGATGTATGGATGGTAGAATCGTTAATAATGATGTTAGAGTGAGATCTCATATTGTTGAATCTTATAGAGGACATCAGCAGGAGGTCTGTGGGCTTAAGTGGTCTCCCTCAGGACAACAATTGGCGAGTGGGGGCAACGATAATGTTATTCACATATGGGACAGGGCTACTGTCTCTTCAAATTCAGCAACCCGTTGGCTTCACAGATTCGAGGAGCATAGAGCTGCTGTGAAGGCACTAGCTTGGTGTCCATTCCAGGGAAATCTGCTAGCTTCTGGTGGAGGTGGGGGTGATCACTGCATTAAGTTCTGGAACACGCATACAGGGGTGTGCTTGAACTCTGTCAACACAGGCTCACAAGTGTGCGCTCTGCTGTGGAACAAGAATGAGCGTGAGTTGCTTAGCTCGCATGGTTTCACCCAGAACCAGCTTACTCTTTGGAAATATCCTTCCATGCTTAAGATGGGAGAGCTCAAGGGTCATACCTCCAGGGTGTTGTTTATGACGCAAAGTCCAGATGGGTGTACAGTGGCTTCTGCAGCAGGGGACGAGACTCTGAGATTTTGGAATGTTTTTGGAACTCCACAGGCTTCCAAACCAGCGCCTAAAGCCAATACTGAGCCCTTTGCTCATGTGAATCGTATTCGCTGA 1371 0.4858 MDAGPWNYSSSKIKSRSSFQGRLFRTKNSQENLDRFIPNRSAMDFGYAHYMLTEGNKKSREKENDVVTSPSREAYQKQLAEAFNMNRTRILAFKNKPPTPVELIPKCILSPPPPPSSSKPRRYIPQSSERTLDAPDILDDFYLNLLDWGSGNVLSIALGNTVYLWNADDSSTAELVTVDEEDGPVTSVAWAPDGRHLAVGLNNFHVQLWDSHSSRMVRTLIGGHQARVGSLAWNNHILTTGCMDGRIVNNDVRVRSHIVESYRGHQQEVCGLKWSPSGQQLASGGNDNVIHIWDRATVSSNSATRWLHRFEEHRAAVKALAWCPFQGNLLASGGGGGDHCIKFWNTHTGVCLNSVNTGSQVCALLWNKNERELLSSHGFTQNQLTLWKYPSMLKMGELKGHTSRVLFMTQSPDGCTVASAAGDETLRFWNVFGTPQASKPAPKANTEPFAHVNRIR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00727 456 ProSitePatterns Trp-Asp (WD) repeats signature. 417 431 IPR019775 -
Lapu6g00727 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Lapu6g00727 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Lapu6g00727 456 MobiDBLite consensus disorder prediction 107 127 - -
Lapu6g00727 456 Pfam Anaphase-promoting complex subunit 4 WD40 domain 177 235 IPR024977 -
Lapu6g00727 456 SUPERFAMILY WD40 repeat-like 143 430 IPR036322 GO:0005515
Lapu6g00727 456 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Lapu6g00727 456 Pfam WD domain, G-beta repeat 307 345 IPR001680 GO:0005515
Lapu6g00727 456 Pfam WD domain, G-beta repeat 395 430 IPR001680 GO:0005515
Lapu6g00727 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 178 219 IPR001680 GO:0005515
Lapu6g00727 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 431 - -
Lapu6g00727 456 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 16 450 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lapu6g00727 456 MobiDBLite consensus disorder prediction 437 456 - -
Lapu6g00727 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 210 - -
Lapu6g00727 456 SMART WD40_4 255 294 IPR001680 GO:0005515
Lapu6g00727 456 SMART WD40_4 391 430 IPR001680 GO:0005515
Lapu6g00727 456 SMART WD40_4 303 345 IPR001680 GO:0005515
Lapu6g00727 456 SMART WD40_4 348 388 IPR001680 GO:0005515
Lapu6g00727 456 SMART WD40_4 171 210 IPR001680 GO:0005515
Lapu6g00727 456 SMART WD40_4 213 251 IPR001680 GO:0005515
Lapu6g00727 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 431 IPR001680 GO:0005515
Lapu6g00727 456 Gene3D - 86 433 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00727 Lapu-Chr6 7638931 7641022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00727 204 431 Miscellaneous Gene Families AT5G08390 21.834 1.55e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00727 K03363 - gmx:100801495 822.387