Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00719 ATGACCCGTTTTTCCGAGAGGCTCCGTTTGCGTTGGTTGTTTCGGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCCTCATCTCTGCAAGTCCCTCGCTCGCTTCCTACTCTCCCAAACCCTACCCTTCCTCGCCATGGACAACTTATTCTCCGACTACCTCTCCGACGACTTCGATTCCTCCCCTTACCGTCCCCACCGCCGCTTCCTCCACGACCACGACCTTGATTTCGCCCACGAGAGGGTCTACCTCCTCCCCTACAGGTGGTTGGTGGAAGCGGAAGGTGAAGCTGATCGAAGAGAGGGTGTGCTTTATACGGTGACGTGTAATTCAGATTCCGACTCCGAGATTTTGCTTCATCTGAGGAAGGAAGAGGAGCACCACAAGATTGGGGTTTCTGGTCGTCAGTATGCGTTGGTTCCCGAGGGAGTTTGGTTGCGAGCACTCAAACGGTATAATGATCTTAATAATGCAGTGAAAGATGTTGGAAGCCTCTCCAATGCAGTGTTTTTTTTGCCAGAATTGTTTCCCTTGCAGGTTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAAATAAGCCAAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCTTGTGACATTTTCAATTCTGCATATAACCCCGTGCATATTTGGGACTTTTCAGGGCAGACAACTCAGTTTTTCCTGAATGACAAATCAGGATTGCCAAATGAGTCTTCTGGTCAATCTGTAAAAGAGGTTGCTCTGGAGTTACAAGTACATGGACTTCCAGATTCTATGAGGGGTAATGGAGGCAATGAGATGATTTTTGATAGGTCTCAGATGGAATGTTCACACAGTGGTTCTGTTATAATGAATGGAAGCACTTACAATGTGCCCCCCAGAGTAACAGCCAACTATTTTCGAGGTAGTAGTTGTAGAGCAATTCAATCTTTGGGCTTGACAGGATTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTACCATAAAGAGATTAATTATGAAAATCCATTGGGAATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTAGAGCTATGCCCATTGCACCTAGAACGTTCAAGATGAAACTGGCAAATTTCGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAGCCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGTAATCACCTTGCTCGCAATGACTCGGTGGTAGTTGATTTGTGCCAAGGTCAGTTTCGGTCAACACTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGATCCTTTTATGTATCTATCACTGCCTTTACCTTCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACTGACGGGATTACATTGCCTTCTACAATTACGGTAACAGTACCTAAATGTGGAACGCTGAAGGATCTTATTGGGGCGTTAAGTTCTTCTTGTTCTCTGGGTGATGATGAAACCCTCTTGGTGGCTGAGATATACAAGAATAAGATTATTGGAGAATACGAGGATCCGTCTCATTCATTAGATGATATTAGAGATCAAGACAAAGTTGTTGCTTATCGAATGCAGAAGGATACTGAAGCTGCTCCCTTGGTTGTTTTTGTCCATGAACGTTCGGTGGAAAAGTGGGGACAATTTTTTGGGAAGGAAAGGTTTGGTATTCCCCTTGTTACAAGGTTGTCCAATATTTCTTGTGGATATGATGTTCAAAGAGAGTTTCTGAAGATAATCAATCCATTTTTGATGCGCACTAAAGATGTATCAGATGATTATGAAAAGAGTGATGGTATTAGTAAAAGACCAAGTGAAGATGATGAATTAGGAGATACTACTAACTCTTCCGCAACAGGAAATGCTGCTGCTGACTCAATAATTGGAACAGATGATGGCATACATTTGTCGACTGACTTTGAATTCTACTTACATGGAATGGAGAACGTCAAGATAATATTGGACAAACCATTTACAGTCACTACATTGTCCAGAAAGTGGCCTGAGGTAGTTGTCTCGTGGTCGGATAAGATGCTTAAAATGTATAATACATCTCTGCTTGACTCATTGCCCGAGGTTTTCAAGCCCCAGCTATTCGCCAAGAGAATACAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGCCCTACCTGCAAAAAACCTCAGCAAGCAACTAAAAAACTAGATCTTTGGAGATTGCCCGAGATCCTTGTTGTTCATTTGAAGAGGTTCTCGTACAGCCGATACTTCAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATCTGGACTTGTCAACATATGTAGCTTACGGGAATAGTCAGTCTACCAACCGCTATGTGTTGTATGCTATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCCATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAATCTGTTAGCGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAA 2757 0.4273 MTRFSERLRLRWLFRKPTRFLALVSLSTLPHLCKSLARFLLSQTLPFLAMDNLFSDYLSDDFDSSPYRPHRRFLHDHDLDFAHERVYLLPYRWLVEAEGEADRREGVLYTVTCNSDSDSEILLHLRKEEEHHKIGVSGRQYALVPEGVWLRALKRYNDLNNAVKDVGSLSNAVFFLPELFPLQVKIFVSWETSSLVAKISQKENVADFYEKACDIFNSAYNPVHIWDFSGQTTQFFLNDKSGLPNESSGQSVKEVALELQVHGLPDSMRGNGGNEMIFDRSQMECSHSGSVIMNGSTYNVPPRVTANYFRGSSCRAIQSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRAMPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSVVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTITVTVPKCGTLKDLIGALSSSCSLGDDETLLVAEIYKNKIIGEYEDPSHSLDDIRDQDKVVAYRMQKDTEAAPLVVFVHERSVEKWGQFFGKERFGIPLVTRLSNISCGYDVQREFLKIINPFLMRTKDVSDDYEKSDGISKRPSEDDELGDTTNSSATGNAAADSIIGTDDGIHLSTDFEFYLHGMENVKIILDKPFTVTTLSRKWPEVVVSWSDKMLKMYNTSLLDSLPEVFKPQLFAKRIQESVSIYKCLEAFLKEEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYSRYFKNKLETFVDFPINDLDLSTYVAYGNSQSTNRYVLYAISCHYGGLGGGHYTAFVRYGHDKWYDFDDSRVESVSEDMIKTPAAYVLFYRKV* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00719 918 Gene3D Cysteine proteinases 311 551 - -
Lapu6g00719 918 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 266 917 - -
Lapu6g00719 918 MobiDBLite consensus disorder prediction 657 686 - -
Lapu6g00719 918 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 323 918 IPR028889 -
Lapu6g00719 918 CDD Peptidase_C19R 765 916 - -
Lapu6g00719 918 MobiDBLite consensus disorder prediction 657 674 - -
Lapu6g00719 918 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 324 339 IPR018200 GO:0004843|GO:0006511
Lapu6g00719 918 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 861 878 IPR018200 GO:0004843|GO:0006511
Lapu6g00719 918 Gene3D Cysteine proteinases 711 918 - -
Lapu6g00719 918 Pfam Ubiquitin carboxyl-terminal hydrolase 323 915 IPR001394 GO:0004843|GO:0016579
Lapu6g00719 918 SUPERFAMILY Cysteine proteinases 321 917 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00719 Lapu-Chr6 7570034 7578252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00719 772 918 Miscellaneous Gene Families AT4G31670 35.333 1.87e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00719 - K21343 gmx:100791802 1505.73