Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00667 ATGGATTCCATTGAAGTCAACTTCACCATGCAAAGCCATACAGAGGCAAAACAAGGCGTCCACACTTATGTTGCTCAGTGGCCTATTTCAGCTCTAGCATGGTCAATGCGTCATGACAAAAGCCCTCGCCTTGCCATTGGCAGTTACTTGGAAGATTACACCAACAAGGTTGAACTTGTCCACTTCAACTACGACACCTTCAATTTCACCACCGACCCTCGTTTGGTGTTTGACCACCCTTATGCACCAACAAACATCATGTTCTTTCCCTCAGAGGATGACACCAATCCAGACCTCATCGCCACCTCAGGTGACAACCTTAGATTATGGGAAATCCACGAAGACCATATTCAACTGAAGTCCCCCCTAATTGGTAACAAAGTTAGTGATCACTCGGCTATTACCTCCTTTGATTGGGCTGTGTTTGATACTCGTCTCATAGCCACTTCTAGTGTAGACACCACATGCACCATCTGGGACATTGAAAGGGAAGTCATGAAGGCACAGCTAGTGGCACATGACAAAGAGGTGTATGACATTTCATGGGGTGGGTTCAATGTCTTTGCTTCCGTGTCAGGTGATGGTTCTGTGAGGGTGTTTGACTTAAGGGACAAGGAGAAATCTACCATAATCTATGAAAACCCTGTTCAGGATTGTCCCTTGCTTCGATTGGAATGGAATAAAAGTGATCCAAGATTTATGGCCACGGTGGGATTGGACAGCAACAAGGTGGTGATATTGGATATCAGGCTTCCAACCACACCATTCATGGAGTTGAGTAAACATAGAACATGTGTTAATGCCATGTCATGGTCCCCAGATTTTGGACGACATTTGTGCTCTGTTAGTGATGATGCAAGAGCCTTCATCTGGGAAGTTATGGACTCAGGGTTTCCATCAAGGAATGGTTGTGATGTGGAGCCAGCGATGTGGTACGGATCATCTGCTGAAATCAACCACGCATGTGCAATATATAACAATTGGTGGCCCATGTTATCAGCTCTGATGTATGTGCTGGTACCTATGCCTTGCTTATTCTTTGGAGGTGGATCGACTCAATTTCTAATGAGCCGTGATGGTGGGGGTTGGATAGATGCTGCAAAATTTTTGACTGGAGCATCAGCCGTTGGGAGCATTGCCATCCCTATAATCCTCAAGCACGCTCATATGATTGAGACAGGCGCAATGCTCATTGAGCTTGTATCGTTCTTCATATTTATATGTACTGTTTTATGTTTCCACCAAGCCAACCTTGATGATGATTGGTAA 1269 0.4507 MDSIEVNFTMQSHTEAKQGVHTYVAQWPISALAWSMRHDKSPRLAIGSYLEDYTNKVELVHFNYDTFNFTTDPRLVFDHPYAPTNIMFFPSEDDTNPDLIATSGDNLRLWEIHEDHIQLKSPLIGNKVSDHSAITSFDWAVFDTRLIATSSVDTTCTIWDIEREVMKAQLVAHDKEVYDISWGGFNVFASVSGDGSVRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMATVGLDSNKVVILDIRLPTTPFMELSKHRTCVNAMSWSPDFGRHLCSVSDDARAFIWEVMDSGFPSRNGCDVEPAMWYGSSAEINHACAIYNNWWPMLSALMYVLVPMPCLFFGGGSTQFLMSRDGGGWIDAAKFLTGASAVGSIAIPIILKHAHMIETGAMLIELVSFFIFICTVLCFHQANLDDDW* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00667 422 Gene3D - 10 310 IPR015943 GO:0005515
Lapu6g00667 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 293 - -
Lapu6g00667 422 Pfam Vacuolar protein sorting 55 321 416 IPR007262 -
Lapu6g00667 422 SMART WD40_4 70 111 IPR001680 GO:0005515
Lapu6g00667 422 SMART WD40_4 252 292 IPR001680 GO:0005515
Lapu6g00667 422 SMART WD40_4 121 160 IPR001680 GO:0005515
Lapu6g00667 422 SMART WD40_4 207 248 IPR001680 GO:0005515
Lapu6g00667 422 SMART WD40_4 163 201 IPR001680 GO:0005515
Lapu6g00667 422 ProSitePatterns Trp-Asp (WD) repeats signature. 279 293 IPR019775 -
Lapu6g00667 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 210 IPR001680 GO:0005515
Lapu6g00667 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 293 IPR001680 GO:0005515
Lapu6g00667 422 Pfam WD domain, G-beta repeat 129 160 IPR001680 GO:0005515
Lapu6g00667 422 Pfam WD domain, G-beta repeat 170 201 IPR001680 GO:0005515
Lapu6g00667 422 PANTHER WD REPEAT CONTAINING PROTEIN 10 323 IPR045159 -
Lapu6g00667 422 SUPERFAMILY WD40 repeat-like 28 296 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00667 Lapu-Chr6 6960809 6965348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00667 321 413 EF-hand Containing Proteins AT1G32410 58.065 9.35e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00667 K11805 - zju:107416321 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00667 6 6960809 6965348 Lapu6g00667 6 6960809 6965348 ECH