Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00648 ATGACGATGAAGAAGTTGGCGAAAGCGAGAGCATTGGCAACAACGAAACCTTCTCCTTCTTCTGTGATCTCCAACCTCCCTCTCCCCTCTCCACCCTCAGACACACCCGTGACCCCAGTTCACTACGCCCGCTTCCTGGACTTCTTGAGGGCCCATTGGGCCCCTCCGTTCACCCCAGACACTCTCCTCCACTTCCTGAAATCGAAGCTCCACCACCACCCCTCCTTCTCTCAATTCGATTTTCACCTCTTCACCTGGGCTTCCTCCCTTGACTCCTTCCGCCACACCCACGCCACCTTCCACTGGATGGCCCGCACCCTCGCCGCCACCCACCGCCTCCCCCAGCTCCGCACCCTCCTCAACCTCCTCGCCACCCACCCCTGCCCCTGCTCTCCCTCCATCTTCTCCTGCCCCCACATCCAACCCATCTTCTCCCACGCCATCCACGCCTTCTCCAAATCCTCCCAACTCCACCACGCCCTTTCTGCATTCCACTCCATGACCAAACTCATCGACTCCAAGCCAGACGTCGCCGTTTTCAACGCCCTCATCCACGCCTTCGTCAAACGCGGTAACCTAAACCAGGCCCTCCAGTTTTACCGCGAGATGGTGGCTACCCACCGCGTTAAGCCTGATGTTTTCACCTTCAACATTTTGATCAGTGGTTACTGTCGGAACTCGCAGTTCGCGTTGGCGTTGGAGGTCTTTCACGAGATGGGGAAAATGGGGTGTGAGCCCAACGTGGTTACTTTTAATACCTTGATTAAGGGGATGTTTAGAGAGGGGAGGGTTGAGGATGCAATTGGGATGGCTCGGGAGATGGTTCAATTGGGGTGTGAGCTTTCGTGTGTTACTTGTGAGATTTTGGTTCAAGGGCTTTGTAAGGAAGGGAGGGTTTTGCAGGCTTGTGAGTTATTGCTGGAGTTTTCTGAAAAGAGGGTTTTTCCTGAGGGGTTTGATTGTTTTGCTTTGGTGGAGGTTTTGTGTGGGCAAGGGTGTGCTGTGAGAGCGTTGGAAGTTGTTTATGAGTTGTGGAATGGGGGGAGTGTTCCGAGTTTGGTTGGTTGTATCGTTCTGGTTGATGGGTTGAGGGGGTTGGGGAAGACTAATGAGGTGCAGAGATTGGTGGAAAGGATGCTTGATGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTGTGTTCTTCGGGATATTTGCGATGCACGGAGAACCGATGAGGCGAATAGATTGATGTTACTTGCTTTGAGCAAGGGTTTGAAACCAGATGACATGACTTTTAGGACTTTGGTTATAGGGTATATGGAAGAGGGAGGGAGGGAGAAAGGAGAGTTACTGGTGAATGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATAAGTTGATGAGTGGATTGTCTAATTGCAAGCGCTCTGCATGCCGTCAAGTAAACAAATTTGATCGCTGA 1455 0.5175 MTMKKLAKARALATTKPSPSSVISNLPLPSPPSDTPVTPVHYARFLDFLRAHWAPPFTPDTLLHFLKSKLHHHPSFSQFDFHLFTWASSLDSFRHTHATFHWMARTLAATHRLPQLRTLLNLLATHPCPCSPSIFSCPHIQPIFSHAIHAFSKSSQLHHALSAFHSMTKLIDSKPDVAVFNALIHAFVKRGNLNQALQFYREMVATHRVKPDVFTFNILISGYCRNSQFALALEVFHEMGKMGCEPNVVTFNTLIKGMFREGRVEDAIGMAREMVQLGCELSCVTCEILVQGLCKEGRVLQACELLLEFSEKRVFPEGFDCFALVEVLCGQGCAVRALEVVYELWNGGSVPSLVGCIVLVDGLRGLGKTNEVQRLVERMLDEGMVLDVVTFNCVLRDICDARRTDEANRLMLLALSKGLKPDDMTFRTLVIGYMEEGGREKGELLVNEMLDRGFIPDLASYNKLMSGLSNCKRSACRQVNKFDR* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00648 484 Gene3D Tetratricopeptide repeat domain 322 482 IPR011990 GO:0005515
Lapu6g00648 484 Gene3D Tetratricopeptide repeat domain 241 314 IPR011990 GO:0005515
Lapu6g00648 484 Gene3D Tetratricopeptide repeat domain 60 240 IPR011990 GO:0005515
Lapu6g00648 484 Pfam PPR repeat 174 204 IPR002885 -
Lapu6g00648 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Lapu6g00648 484 MobiDBLite consensus disorder prediction 9 34 - -
Lapu6g00648 484 Pfam PPR repeat 284 313 IPR002885 -
Lapu6g00648 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Lapu6g00648 484 Pfam PPR repeat family 211 258 IPR002885 -
Lapu6g00648 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Lapu6g00648 484 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 324 473 - -
Lapu6g00648 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Lapu6g00648 484 NCBIfam pentatricopeptide repeat 179 212 IPR002885 -
Lapu6g00648 484 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Lapu6g00648 484 NCBIfam pentatricopeptide repeat 214 248 IPR002885 -
Lapu6g00648 484 NCBIfam pentatricopeptide repeat 284 316 IPR002885 -
Lapu6g00648 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Lapu6g00648 484 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00648 212 483 Glycosyltransferase AT1G05670 23.358 1.16e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00648 - - gmx:100796880 745.347