Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00621 ATGGTTTACACCATCTCGGGAATTCGATTTCCGGTTGTTCCTTCGCTGCACAGCTCCACCCTCCGTGGTGCCGATCGCAGGGCTGCGTCTCTTCCCGTTTTTCTCAGAAAGAACAACTTCTCTCGAAAAATCCTTGCTGTAAAGTCTTCTCATGATTCTGAATCCCCGTCTTCCGCAATTGCTGAATCTGATAAGGTGCTTATTCCTCAAGATCAAGATAACTCTGCATCCTTGACAGATCAACTTGAAACTCCTGATATAACCTCGGAGGATGCACATAACTTAGAGGATTTAACCATGGAAGATGAGGATAAATACAGCATTAGTGAAGCAGATAGCAGTTACAGACAGATTGAAGATGGGCTAGGCTCTGTTGTATCATCACCAGTAGATGTTGATATCCCAGCCAAGGCATCAGTATCTGTTGGCAAGAAAGTAATGATACCAAGTAAACCTAAGAACATTCCCCTACCTGGCGCTGGGCAGAAAATATATGAGGTTGATCCATCTTTGCTAGCCCACCGTGAGCATCTTGATTTCCGTTTTGGTCAATACAAAAGATTACATGATGAAATTAACAAGCATGAAGGTGGTCTGGATACATTTTCTCGCGGCTATGAAAAATTTGGCTTCATACGCAGTGCTACAGGCATTACTTACAGAGAGTGGGCACCTGGAGCTAAGTCAGCTGCATTGATTGGAGACTTCAACAATTGGAATTCAAATGCAGATGTAATGACTCGGAATGAGTTCGGTGTTTGGGAGATTTTCTTGCCTAACAATGTGGATGGTTCACCACCGATTCCTCATGGTTCTCGGGTCAAGATCCGCATGGATACTCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATCAAGTTTTCTGTACAGGCTCCTGGTGAAATTCCATATAGTGGAATATATTATGATCCCCCAGAAGAGGAAAAATATGTGTTCAAACATCCACAGCCAAAGAGACCAAAATCACTTAGAATATATGAGTCACACGTTGGAATGAGTAGTCCGGAGCCAAAAATCAACACGTATGCCAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTACAATGCTGTTCAGATTATGGCCATCCAAGAACATTCTTATTATGCCAGCTTTGGGTACCATGTTACCAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGATCTTAAGTCTCTGATAGACAGAGCCCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTTCACAGCCATGCATCAAATAATACATTGGATGGGCTAAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGTTCACGAGGCTATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTCGACGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCATCATGGATTGCAGGTAGCATTTACTGGAAATTACAGTGAGTACTTTGGTTTGGCCACTGATGTTGATGCTGTAATTTACCTGATGTTGGCTAATGATCTCATTCATGGACTTTTCCCTGAGGCTGTTACCATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCTACGCAAGATGGTGGAGTTGGTTTTGATTATCGCCTGCAAATGGCCATTGCAGACAAGTGGATTGAGATTCTCCAGAAGAAAGATGAGGACTGGAAAATGGGTGATATTGTCCACACACTAACAAACAGAAGGTGGCTGGAGAAATGTGTAGCTTATGCTGAGAGTCATGACCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGTCTTTAGACAGGCCATCTACACCTCGAATAGATCGTGGTATAGCATTACACAAAATTATTAGGCTTATTACCATGGGACTTGGTGGTGAAGGATATTTGAATTTTATGGGGAATGAGTTTGGTCATCCTGAGTGGATTGATTTTCCAAGGGGTGAGCAACAACTTCCTAATGGCTCAGTAATTCCAGGGAACAACTACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGAGATGCAGACTATTTAAGATATCGAGGGATGCAAGAATTTGATCAAGCCATGCAGCATTTAGAAGAAAAGTTTGGCTTCATGACTGCTGAGCACCAATATATTTCACGGAAAAATGAAGGTGACAAAGTTATAGTCTTTGAAAGGGGCAACCTAGTCTTTGTCTTCAATTTTCATTGGAACAACAGCTATTCAGATTACAGAGTTGGCTGCTTAACCCCTGGGAAATATAAGATTGTCATGGATACAGATGATGCCTTGTTTGGTGGCTTCAATAGGCTCAACCACTCTGCTGAGTACTTCACTTCTGAAGGATGGTATGATGACCGACCTCGATCCTTTCTTATCTATGCACCCTCTAGAACAGCAGCGGTTTATGCCCTTGCAGATGATCTTGAGCCAGCCCCTGCAGTTGAAGTTGAACGAGTCCTTGCAGATGAAGTTGAACCAGAGCCAGTTGATCCTTGA 2604 0.4274 MVYTISGIRFPVVPSLHSSTLRGADRRAASLPVFLRKNNFSRKILAVKSSHDSESPSSAIAESDKVLIPQDQDNSASLTDQLETPDITSEDAHNLEDLTMEDEDKYSISEADSSYRQIEDGLGSVVSSPVDVDIPAKASVSVGKKVMIPSKPKNIPLPGAGQKIYEVDPSLLAHREHLDFRFGQYKRLHDEINKHEGGLDTFSRGYEKFGFIRSATGITYREWAPGAKSAALIGDFNNWNSNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGIKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKRPKSLRIYESHVGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSLIDRAHELGLLVLMDIVHSHASNNTLDGLNMFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVAFTGNYSEYFGLATDVDAVIYLMLANDLIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLQMAIADKWIEILQKKDEDWKMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMSLDRPSTPRIDRGIALHKIIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQQLPNGSVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEEKFGFMTAEHQYISRKNEGDKVIVFERGNLVFVFNFHWNNSYSDYRVGCLTPGKYKIVMDTDDALFGGFNRLNHSAEYFTSEGWYDDRPRSFLIYAPSRTAAVYALADDLEPAPAVEVERVLADEVEPEPVDP* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00621 867 CDD AmyAc_bac_euk_BE 313 728 - -
Lapu6g00621 867 Pfam Alpha amylase, C-terminal all-beta domain 746 839 IPR006048 GO:0003824|GO:0005975|GO:0043169
Lapu6g00621 867 Pfam Alpha amylase, catalytic domain 357 428 IPR006047 GO:0005975
Lapu6g00621 867 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 742 842 - -
Lapu6g00621 867 FunFam 1,4-alpha-glucan branching enzyme 311 737 - -
Lapu6g00621 867 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 139 842 - -
Lapu6g00621 867 SUPERFAMILY Glycosyl hydrolase domain 743 841 - -
Lapu6g00621 867 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 204 316 - -
Lapu6g00621 867 Gene3D - 742 846 IPR013780 -
Lapu6g00621 867 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 208 291 IPR004193 GO:0004553|GO:0005975
Lapu6g00621 867 SUPERFAMILY E set domains 202 311 IPR014756 -
Lapu6g00621 867 Gene3D Immunoglobulins 204 316 IPR013783 -
Lapu6g00621 867 Gene3D Glycosidases 168 737 - -
Lapu6g00621 867 SMART aamy 347 727 IPR006047 GO:0005975
Lapu6g00621 867 CDD E_set_GBE_euk_N 216 309 - -
Lapu6g00621 867 SUPERFAMILY (Trans)glycosidases 320 734 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00621 Lapu-Chr6 6487611 6514241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00621 29 842 Glycoside Hydrolase AT5G03650 75.921 0.0 1298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00621 K00700 - gmx:100816963 1634.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00621 6 6487611 6514241 Lapu6g00621 6 6487611 6514241 ECH