Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00547 ATGGCAGCAACCTCAACATCACTAGCTTCTCAACTCTACATTGGCCTGCGCCGCCCCTGCCCCAAGCTCGATTCTTTCAATTCTCCATCTTTTTCTGCCTTCGACCCCAATCTTCGCCTATCCCTCTCTCCTCCCAAACCCTCACGCGCCGTTGTTGCCATGGCCGGCTCCGGCAAGTTCTTTGTCGGTGGCAACTGGAAGTGTAACGGAACGAAAGATTCCATCAGTAAGCTTGTCGCGGACCTGAACAGTGCAAAGTTGGAGCCCGATGTTGATGTTGTTGTTGCACCTCCCTTTGTGTACATCGATCAAGTGAAAAGCTCACTTACAGACAGGATTGAAATATCTGCCCAGAATTCTTGGGTGGGTAAAGGTGGTGCTTTCACTGGAGAAATCAGGTACTATTTCTTTTATGTTCACACTTTCCTTGCTGTTTCCGATGTGATTCTGATTGCGGAACAACTGAAAGATCTTGGATGCAAGTGGGTTGTTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAGGGTCTTGGAGTTATTGCATGCATTGGAGAATTGTTAGAAGAAAGGGAAGCGGGGAAAACTTTTGATGTTTGCTTTCAGCAATTGAAGGCTTATGCTGATGCTGTTCCTAGTTGGGACAATATTGTTATTGCGTATGAACCTGTATGGGCCATTGGAACTGGCAAAGTTGCCACTCCCCAGCAAGCTCAGGAAGTACATGCAGCTGTTCGGGATTGGCTGAAAAAGAATGTCTCAGAGGAAGTTGCATCTAAAACTCGAATTATTTATGGAGGATCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATCGATGGATTTCTCGTTGGAGGTGCTTCATTGAAGGGTCCTGAGTTTGCTACCATTGTCAATTCAGTCACATCCAAGAAAGTTGCGGCATGA 984 0.4583 MAATSTSLASQLYIGLRRPCPKLDSFNSPSFSAFDPNLRLSLSPPKPSRAVVAMAGSGKFFVGGNWKCNGTKDSISKLVADLNSAKLEPDVDVVVAPPFVYIDQVKSSLTDRIEISAQNSWVGKGGAFTGEIRYYFFYVHTFLAVSDVILIAEQLKDLGCKWVVLGHSERRHIIGENDEFIGKKAAYALSQGLGVIACIGELLEEREAGKTFDVCFQQLKAYADAVPSWDNIVIAYEPVWAIGTGKVATPQQAQEVHAAVRDWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00547 327 PANTHER TRIOSEPHOSPHATE ISOMERASE 55 319 IPR000652 GO:0004807
Lapu6g00547 327 ProSitePatterns Triosephosphate isomerase active site. 235 245 IPR020861 GO:0004807
Lapu6g00547 327 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 59 319 IPR000652 GO:0004807
Lapu6g00547 327 FunFam Triosephosphate isomerase 54 321 - -
Lapu6g00547 327 CDD TIM 60 318 IPR000652 GO:0004807
Lapu6g00547 327 Pfam Triosephosphate isomerase 61 133 IPR000652 GO:0004807
Lapu6g00547 327 Pfam Triosephosphate isomerase 152 319 IPR000652 GO:0004807
Lapu6g00547 327 SUPERFAMILY Triosephosphate isomerase (TIM) 57 320 IPR035990 GO:0004807
Lapu6g00547 327 Hamap Triosephosphate isomerase [tpiA]. 58 319 IPR022896 GO:0004807|GO:0006096
Lapu6g00547 327 Gene3D Aldolase class I 45 326 IPR013785 -
Lapu6g00547 327 NCBIfam triose-phosphate isomerase 151 309 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00547 Lapu-Chr6 5727885 5731972 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00547 K01803 - gmx:100819824 570.466