Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00526 ATGTTCTCTTCCTCTCCACCGTTCCCTTCATCTTCTTCGCCCTCGGTTATGACGCTTCATGAACAAGCTGCTCCGGCAGTTGCATCCTGGTCTTCTAGCTCTACAGCTCGCCATTTTCCTACCTCCGTTCTTTTACAAGAACAGCGTGAGGAGTATAGGCCCCTACTGCACGTCTATAATAAGGAGGCAACACTAAACACAAGGCAGATGGATATGACCTCAGTTCAAAGTAACACAGGCAATGCTGATCAGTTAGTGCATGACTTTGTTCAGCAGTTGCATCTACGGTCTCATTTACAGAACTTATTGACTTGTTATCCAACTAGGGGAATTGCTGCATCATCGACTCTTCAGCCTGTTGATAATGATTCAGAGAGGCCTGCAGATGATCTGCCGAGCAATGCAGTTTCTCTTGCTCAGCAAGCTTTGTCAGCATCAAAGCAAGCAGTTTCATCAGTTGAAGTTAATGATGATGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGCTGACTCTTCACTAAAAAGGAATAAAATTGTGAGGTCAACACGGGTTATAGAGAGACGATCTAAACAAAGAAAAGCATCAAAGTCAAAACTTCTTGATGACGAAAGTTACCTTGAAAGAAAATCTGATGTACAGAGAAGGTTAAGGTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAATGACCCCTTGCGCTTGTTCTTGTCGGATCCTGAATCAAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTGTCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGGCGAGAACCAACATTAGCTGAATGGGCTGATGTCTTGGGCCTTAGTTGTTGTGCCCTGCAGACACAGCTTCATTGTGGTAACAGAAGCAAAGAAAAGCTGTTTCATGCCAATTTGCGAATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTACGGGTCTTATGAAGAGCATTGACAAGTTTAAACCTGGAGCTGGTTGCCGGTTTGGTAGTTATGCTTATTGGTGGATAAGGCATTCAGTAAGGAAGGCAATATTTCTACATTCCAGGACAATCCGTATGCCGGAGAATTTATATAGACTTTTGGGCAAGGTCATAGAAGCAAAGAAATCATACATTCGGGAGGGAAATATTCACCCCACCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAATAGACAAGTTGGAAACTTTACTATTTGCTTCAAGAAATCCAATTTCGATGCAGCAAACTGTGTGGGCGGACCAAGATACAACTTTCCAGGAGATTACTGCAGACTCAGCAACTGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGGAGGCATGTGCACAACCTTTTAAATGTGTTGAGCCCTAAAGAAAAGAGCATAATCAGGCTAAGATTTGGTATTGAGGATGGCACCGAAAAAACGTTGTCAGATATTGGCAAGGTGTTTGGTTTGACCAAGGAAAGGGTCCGACAGTTGGAGAGCCGAGCGTTGTCCAAGCTCAAGCAGTGTCTTAAAAGTGAAGGACTTGACGCATACATAGACTTGCTCATATAG 1641 0.4278 MFSSSPPFPSSSSPSVMTLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHVYNKEATLNTRQMDMTSVQSNTGNADQLVHDFVQQLHLRSHLQNLLTCYPTRGIAASSTLQPVDNDSERPADDLPSNAVSLAQQALSASKQAVSSVEVNDDDPLSFGLASTSLADSSLKRNKIVRSTRVIERRSKQRKASKSKLLDDESYLERKSDVQRRLRLEKKLNEGFDQNDPLRLFLSDPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQLRREPTLAEWADVLGLSCCALQTQLHCGNRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLLQEGSTGLMKSIDKFKPGAGCRFGSYAYWWIRHSVRKAIFLHSRTIRMPENLYRLLGKVIEAKKSYIREGNIHPTKEELARRVGITIDKLETLLFASRNPISMQQTVWADQDTTFQEITADSATEIPDVCVSKQLMRRHVHNLLNVLSPKEKSIIRLRFGIEDGTEKTLSDIGKVFGLTKERVRQLESRALSKLKQCLKSEGLDAYIDLLI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00526 546 Gene3D - 466 545 IPR036388 -
Lapu6g00526 546 CDD Sigma70_r4 472 530 - -
Lapu6g00526 546 ProSitePatterns Sigma-70 factors family signature 2. 503 529 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 PRINTS Major sigma-70 factor signature 482 494 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 PRINTS Major sigma-70 factor signature 518 529 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 PRINTS Major sigma-70 factor signature 334 347 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 PRINTS Major sigma-70 factor signature 503 518 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 PRINTS Major sigma-70 factor signature 358 366 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 383 456 IPR013324 -
Lapu6g00526 546 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 133 542 - -
Lapu6g00526 546 Pfam Sigma-70 region 2 310 374 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 Pfam Sigma-70, region 4 478 531 IPR007630 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 230 380 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 Pfam Sigma-70 region 3 390 458 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 NCBIfam sigma-70 family RNA polymerase sigma factor 308 533 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lapu6g00526 546 Gene3D - 140 379 - -
Lapu6g00526 546 Gene3D - 383 459 IPR036388 -
Lapu6g00526 546 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 443 542 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00526 Lapu-Chr6 5453793 5459609 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00526 - - gmx:100815699 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00526 6 5453793 5459609 Lapu6g00526 6 5453793 5459609 ECH