Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00504 ATGATGAACACATCCAACGGCATGATGTCACCGTCGTCTTCGTCGGGAACGACACAGTCGCCGGGGCTCAAAACCTATTTCAAAACTCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGAAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAAGACAAGCCTGCGCCTTCTACACCAACTGCGTCGTCTTCAAGTTTCAGTGCCAGCAGCGGGGTACGGTCTGCGGCAGCTAGATTATTGGGAGGAAGCAACGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAGAGTAATGGAGGGAACAGTAGGATTGGTTCCATTGGAGCCTCGAGTACAAGTAGTTCAATGGCTAATCCAAATTTTGATGGGAAGGGGACTTACCTGATATTCAACGTCGGTGATGCAATTTTCATTAGCGATTTGAATTCTCAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCAGTGTGCCATGCGTTTGATCAGGATTCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCAGTCAATAACAGGCAAGATATGATTATTCTATCCTTTGTGCTCCGTTGTACATGTATTGCATGGGTGCCTGGAGGTGATGGTGCTTTTGTTGTTTCTCATTCAGATGGTAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTTGTAAAAGATCAAACTCAATTTTCTGTTGCCCATGCACGATACAGTAAGAGTAATCCGATAGCTAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAATGGATGGAGCATACTTGGCAACTGTTGGACGGGATGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACAACTTATATGCGGTGGGAAAAGTTATTACGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAGTATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAAGTTGTGGCATGGGGTGAGGGACATAGCTCATGGGTCAGTGGAGTTGCTTTCGATCCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACCGTTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTGGTGCCGTTGAGGCGGCCACCTGGTGGATCTCCAACTTACAGTACTGGAAGCCAATCATCACACTGGGACAATGTTGTTCCATTGGGTACCTTGCAAGCTGCTCCAAGCATGCGGGATGTTCCAAAAATCTCTCCATTGGTTGCTCACCGTGTGCATACTGAGCCACTCTCTGGCTTGATATTTACCCAGGAATCTGTCCTTACTGCCTGTCGGGAGGGGCACATCAAAGTGTGGATGAGGCCAGGGGTTGCTGCCGAGACCCAATCAAACAATTCTGAAAACTTGTTAGCTACCAGTCTCAAGGACAAACCTTCACTCTCAACCAAGATCACCAATTCTGCCTACAAACAATGA 1674 0.4576 MMNTSNGMMSPSSSSGTTQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNSRIGSIGASSTSSSMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDSKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNRQDMIILSFVLRCTCIAWVPGGDGAFVVSHSDGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHSSWVSGVAFDPYWSSPNSNDNGETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQAAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKVWMRPGVAAETQSNNSENLLATSLKDKPSLSTKITNSAYKQ* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00504 557 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 387 IPR001680 GO:0005515
Lapu6g00504 557 Gene3D - 12 528 IPR015943 GO:0005515
Lapu6g00504 557 MobiDBLite consensus disorder prediction 107 132 - -
Lapu6g00504 557 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g00504 557 Pfam WD domain, G-beta repeat 308 336 IPR001680 GO:0005515
Lapu6g00504 557 Pfam WD domain, G-beta repeat 353 378 IPR001680 GO:0005515
Lapu6g00504 557 SMART WD40_4 482 519 IPR001680 GO:0005515
Lapu6g00504 557 SMART WD40_4 381 433 IPR001680 GO:0005515
Lapu6g00504 557 SMART WD40_4 339 378 IPR001680 GO:0005515
Lapu6g00504 557 SMART WD40_4 297 336 IPR001680 GO:0005515
Lapu6g00504 557 SMART WD40_4 228 268 IPR001680 GO:0005515
Lapu6g00504 557 SUPERFAMILY WD40 repeat-like 150 518 IPR036322 GO:0005515
Lapu6g00504 557 PANTHER WD REPEAT PROTEIN 12 536 - -
Lapu6g00504 557 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00504 313 440 Miscellaneous Gene Families AT5G08390 23.438 4.12e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00504 K24741 - gmx:100782580 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00504 6 5207929 5215167 Lapu6g00504 6 5207929 5215167 ECH