Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00464 ATGCCTCGCTATGATGATAAGTATGGAAATACCCGCCTGTATGTGGGGCGCTTGTCTGCAGATACTCGTTCCCGTGATCTGGAGCGTGTCTTCGGCAGATATGGAAGAGTTCGAGGGGTGGATATGAAGAATGATTTCGCCTTTGTTGAATTTAGCGATGCTCGAGATGCTGATGAAGCTAGATATAACCTAGATGGCCGTGATGTTGAAGGAAGTCGTATTATTGTGGAGTTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAATACATGGGTCGGGGTCCACCACCTGGATCTGGACGATGCTTTAACTGTGGCATTGACGGTCATTGGGCCCGTGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGCAAGAATAGTCCCAAAAAGTTGAGCAGTAGCAGACGTGGACGCAGTCGTTCTCGTTCACCTGTTAGGTCACGTTCTCCTCGTCATGGCAGAAGCAGGGATCGAAGCTACAGTCGTGACCGCAGCTACAGTCGATCGAGATCTCCTGTCAGAAGAGCAAGAAGCCCAGTTTCTGAAGATAGGTCACGGAGTCCTCAGCCCTCGAAGATAAGGAAGCATAGTGCTTCGCCTGACCGTGGTAGCCCACATAAACGAGGTGACACGTCTCCTGGTAATGATAGGTTGGTCACTAATCGAGATGGGTCTGAATACAGCGATGGTCCTGGAGGCAAAATTAGAAGTCCTGGTAGCCCTGCAAGGGACCGCAATGTGAGGGACTATGATAGCCCTAAAGCTAATGGTCGCAGTGGCAGCCCTATCCGTAGTCCTAGGGATTATGACAGGAGCCCCATTGATGAAGATGACGACAACCACCGCCGCTCACAGTCACCTTAG 900 0.5111 MPRYDDKYGNTRLYVGRLSADTRSRDLERVFGRYGRVRGVDMKNDFAFVEFSDARDADEARYNLDGRDVEGSRIIVEFAKGGPRGSREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSSRRGRSRSRSPVRSRSPRHGRSRDRSYSRDRSYSRSRSPVRRARSPVSEDRSRSPQPSKIRKHSASPDRGSPHKRGDTSPGNDRLVTNRDGSEYSDGPGGKIRSPGSPARDRNVRDYDSPKANGRSGSPIRSPRDYDRSPIDEDDDNHRRSQSP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00464 299 Gene3D - 3 90 IPR012677 -
Lapu6g00464 299 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Lapu6g00464 299 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Lapu6g00464 299 MobiDBLite consensus disorder prediction 166 225 - -
Lapu6g00464 299 MobiDBLite consensus disorder prediction 276 299 - -
Lapu6g00464 299 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 200 - -
Lapu6g00464 299 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 91 119 - -
Lapu6g00464 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Lapu6g00464 299 Gene3D - 91 119 - -
Lapu6g00464 299 Gene3D - 120 164 - -
Lapu6g00464 299 MobiDBLite consensus disorder prediction 141 165 - -
Lapu6g00464 299 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lapu6g00464 299 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Lapu6g00464 299 MobiDBLite consensus disorder prediction 134 299 - -
Lapu6g00464 299 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
Lapu6g00464 299 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Lapu6g00464 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Lapu6g00464 299 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Lapu6g00464 299 SMART rrm1_1 12 77 IPR000504 GO:0003723
Lapu6g00464 299 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Lapu6g00464 299 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00464 Lapu-Chr6 4868597 4872381 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00464 K12896 - gmx:100813237 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00464 6 4868597 4872381 Lapu6g00464 6 4868597 4872381 ECH