Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00457 ATGATGGGGACCTTCGAGTTCGACGCCGAGGTTGCCCACATCAAGTCCGCCATCTTCAACGAGGTCAACGACCTCGGGGAAACCGCTCTCTTCACCGCCACGGAAAAGGGGCACCTCGAGGTCGTCCGCGAGCTCCTCCCTCACTCGACCGCCGAAGCCCTTTCCTCCAAAAACCGCTCCGGCTTTGACAGCTTGCACATTGCCGCTAGCAAAGGTCATCTTGCCCTTGTGCAGGTGCTACTAGACCATGACCCTGGGTTGATTAAGACGTTTGCGCAGTCAAATGCAACTCCTCTAATCTCAGCGGGTACACGAGGTCACGCGGATGTTGTTGAAGAGTTGTTGTCCCGGGATCCTACTCAGTTGGAGATGACTAGGTCCAACGGAAAGAATGCTCTCCATTTAGCTGCACGGCAGGGACATGTGGGTGTTGTGAAGATTCTGCTGCGGAAGGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACTGCGTTACACATGGCTGTCAAAGGGATTAGTTGTGAAGTGGTAAAGCTCATTCTGGCTGCGGATGCAGCCATTGTCATGCTCCCTGATAGGTTTGGCAATACTGCATTACATGTAGCCACGAGGAAGAAGAGGGCAGAGATAGTGAATGAGCTGTTACTTCTTCCTGACACCAATGTAAATACCTTGACAAGAGAACACAAGACAGCTCTAGACCTTGCAGAGGGGCTTCCAATATCTGAAGAAATTCTGGAGATCAAAGAGTGTCTGATTCGTTATGGCGCAGTTAAAGCCAACGATCTCAACCAACCAAGGGATGAGCTAAAAAAAACCATGACACAAATTAAGAAAGATGTCTATTTTCAGCTGGAACAAACTCGAAAAACAAATAAGAATGTGAGTGGGATTGAAAAAGAGCTACGCAAGTTGCACAGGGATGGAGTCAACAATGCTGCAAACTCAGTAACGGTGGTTGCCGTGCTATTTGCGGCAGTTGCATTTGCAGCACTTTTCACAGTTCCTGGTGGGGATTATGATAATGGGATGGCAGTGATGGTACATACTGCACCTTTCAAAGCCTTCTTCATATCTAATGCATTGGCACTGTTTACATCATTAGCAGTGGTGTTGGTTCAAATCACCCTTGTTAGAGGGGAGGTAAAGACTGAGAGAAAGGTTGTGGAGGTGATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATTTATTACAGCATCTTATATAGTAGTTGGTCGGCGCAGCCTGTGGGCTGCAATACTTGTTACAGTGGTTGGGGGGATCGTAATGGGTGGTGTTCTTGGTACCATGACATACTATGTGGTAAAATGCAAACGCTCCCGAAGAGAGAGGAAGAAAGAGAAGAACTCTAAGAAAGGAGAAACACACTTGTGGCGTCTTTCGAACTCTGATGATTCAGAAATAAATCCAATCTACGCCATTTGA 1464 0.4734 MMGTFEFDAEVAHIKSAIFNEVNDLGETALFTATEKGHLEVVRELLPHSTAEALSSKNRSGFDSLHIAASKGHLALVQVLLDHDPGLIKTFAQSNATPLISAGTRGHADVVEELLSRDPTQLEMTRSNGKNALHLAARQGHVGVVKILLRKDPQLARRTDKKGQTALHMAVKGISCEVVKLILAADAAIVMLPDRFGNTALHVATRKKRAEIVNELLLLPDTNVNTLTREHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLNQPRDELKKTMTQIKKDVYFQLEQTRKTNKNVSGIEKELRKLHRDGVNNAANSVTVVAVLFAAVAFAALFTVPGGDYDNGMAVMVHTAPFKAFFISNALALFTSLAVVLVQITLVRGEVKTERKVVEVINKMMWLASVCTSVSFITASYIVVGRRSLWAAILVTVVGGIVMGGVLGTMTYYVVKCKRSRRERKKEKNSKKGETHLWRLSNSDDSEINPIYAI* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00457 487 SUPERFAMILY Ankyrin repeat 16 258 IPR036770 -
Lapu6g00457 487 SMART ANK_2a 128 157 IPR002110 GO:0005515
Lapu6g00457 487 SMART ANK_2a 196 226 IPR002110 GO:0005515
Lapu6g00457 487 SMART ANK_2a 60 89 IPR002110 GO:0005515
Lapu6g00457 487 SMART ANK_2a 94 123 IPR002110 GO:0005515
Lapu6g00457 487 SMART ANK_2a 25 55 IPR002110 GO:0005515
Lapu6g00457 487 SMART ANK_2a 162 191 IPR002110 GO:0005515
Lapu6g00457 487 ProSiteProfiles Ankyrin repeat profile. 196 229 IPR002110 GO:0005515
Lapu6g00457 487 ProSiteProfiles Ankyrin repeat profile. 60 83 IPR002110 GO:0005515
Lapu6g00457 487 Gene3D - 8 119 IPR036770 -
Lapu6g00457 487 ProSiteProfiles Ankyrin repeat region circular profile. 128 151 - -
Lapu6g00457 487 ProSiteProfiles Ankyrin repeat profile. 128 160 IPR002110 GO:0005515
Lapu6g00457 487 Pfam Ankyrin repeats (3 copies) 106 186 IPR002110 GO:0005515
Lapu6g00457 487 Pfam Ankyrin repeats (3 copies) 22 83 IPR002110 GO:0005515
Lapu6g00457 487 ProSiteProfiles Ankyrin repeat profile. 162 194 IPR002110 GO:0005515
Lapu6g00457 487 Pfam Ankyrin repeat 197 225 IPR002110 GO:0005515
Lapu6g00457 487 Pfam Domain of unknown function 311 416 IPR026961 -
Lapu6g00457 487 Gene3D - 120 253 IPR036770 -
Lapu6g00457 487 ProSiteProfiles Ankyrin repeat region circular profile. 60 83 - -
Lapu6g00457 487 FunFam Ankyrin repeat-containing protein ITN1 121 241 - -
Lapu6g00457 487 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 17 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00457 Lapu-Chr6 4777578 4781509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00457 6 487 Miscellaneous Gene Families AT3G12360 70.539 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00457 - - gmx:100779710 789.645