Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu6g00450 | ATGGCCATGACAGCCACCATTTCCATTCCTCTCACATCCCCCACGCGCCGCACTCTCGCCTCCCTCAATAATCTCTTCCCCCACTCTTCCAGATCAACTTTGCCCACACCGCGACGCAATTTCAAGTACCCTAATTCCCGCCTTGTCGCCTCCTCCATGAGCACCGACGCCACCGTCAAAAACCCCTCCGATTCCTTCCTCCACCGCCTAGAGACCCGCTTTCAACATTTCGTCAAGTACCACGGCCTCGGAAACGACTTCATTTTGATTGATAATAGAAAATCGTCCGAGCCTGTAATCAGTGCAGAGAAAGCGGTGCAACTGTGTGATCGGAACTTTGGTGTTGGAGCTGACGGAGTTATCTTTGTATTGCCGGGCATCAATGGCACTGATTATACCATGAGGATTTTTAACTCTGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTGCGATGCTTTGCCAAGTTCGTTTCTGACCTTGAGAATTTACAAGGAAGCCATAGTTTTACGGTACATACTGGTGCTGGTCTGATTATACCTGAAGTCTTAGAGGATGGAAATGTAAGAGTTGACATGGGGGAACCGGTTCTTAAAGCCTCAGATGTGCCTACTAAATTACCTGCAAACAAGGATGAAGCTGTTGTTAAATCAGAGCTAGTTGTGGATGGCGTTATCTGGCATGTGACCTGTGTTAGCATGGGAAATCCACATTGTGTAACCTTCAGTAGAGAAGGAAGCCAGAATCTGCTTGTTGATGAATTGAAGCTAGCAGAAATAGGCCCAAAATTTGAACATCATGAGGTGTTCCCAGCACGAACTAACACAGAGTTTGTGCAAGTATTGTCTGATTCTCACCTGAAAATGCGTGTTTGGGAACGGGGAGCAGGAGCAACTCTAGCATGTGGAACTGGAGCTTGTGCTACTGTTGTTGCGGCCGTTCTTGAGGGTCATGCTGGAAGGAAATGCACGGTTGATCTACCTGGAGGGCCTCTTCAGATTGAGTGGAGGGAGGAAGATAATCATGTGTATATGACAGGCTCAGCAGATGTAGTTTTTTACGGAACTTTGCTTATTTGA | 1080 | 0.4741 | MAMTATISIPLTSPTRRTLASLNNLFPHSSRSTLPTPRRNFKYPNSRLVASSMSTDATVKNPSDSFLHRLETRFQHFVKYHGLGNDFILIDNRKSSEPVISAEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSDLENLQGSHSFTVHTGAGLIIPEVLEDGNVRVDMGEPVLKASDVPTKLPANKDEAVVKSELVVDGVIWHVTCVSMGNPHCVTFSREGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSDSHLKMRVWERGAGATLACGTGACATVVAAVLEGHAGRKCTVDLPGGPLQIEWREEDNHVYMTGSADVVFYGTLLI* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu6g00450 | 359 | FunFam | Diaminopimelate epimerase chloroplastic | 199 | 346 | - | - | |
| Lapu6g00450 | 359 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 209 | 343 | - | - | |
| Lapu6g00450 | 359 | Hamap | Diaminopimelate epimerase [dapF]. | 75 | 359 | IPR001653 | GO:0008837|GO:0009089 | |
| Lapu6g00450 | 359 | Pfam | Diaminopimelate epimerase | 77 | 198 | IPR001653 | GO:0008837|GO:0009089 | |
| Lapu6g00450 | 359 | Pfam | Diaminopimelate epimerase | 231 | 351 | IPR001653 | GO:0008837|GO:0009089 | |
| Lapu6g00450 | 359 | SUPERFAMILY | Diaminopimelate epimerase-like | 218 | 356 | - | - | |
| Lapu6g00450 | 359 | FunFam | Diaminopimelate epimerase, chloroplastic | 49 | 198 | - | - | |
| Lapu6g00450 | 359 | NCBIfam | diaminopimelate epimerase | 76 | 357 | IPR001653 | GO:0008837|GO:0009089 | |
| Lapu6g00450 | 359 | Gene3D | Diaminopimelate Epimerase; Chain A, domain 1 | 49 | 205 | - | - | |
| Lapu6g00450 | 359 | PANTHER | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC | 65 | 357 | IPR001653 | GO:0008837|GO:0009089 | |
| Lapu6g00450 | 359 | ProSitePatterns | Diaminopimelate epimerase signature. | 138 | 152 | IPR018510 | GO:0005737|GO:0008837|GO:0009089 | |
| Lapu6g00450 | 359 | SUPERFAMILY | Diaminopimelate epimerase-like | 76 | 204 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu6g00450 | K01778 | - | gmx:100784731 | 634.024 |