Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00441 ATGGTGGGTGTTGTTTCGTTGGTAACAGGGAGGGCTGGTCCAAGTGGCTTTGGATCAGCTTCCACTGCAGAACAGGTTACTGAAGGAATTGATGCTGCCAACCTCACTGCGATTATCACAGGAGGAGCAAGTGGCATTGGGTTGGAGACAACACGAGTGTTGGCACTTCGAAAGGTTCATGTGATCATTGCAGTACGAAACATGGTGTCTGCAAAAGAAGCTAAACAACGTATACTAGAAGAGAATGAGTCAGCACGAGTCGACATTATGAAGCTCGATTTGTGCTCACTCAATTCTGTTACATCCTTCGTCGACAACTTCCTAGCTCTTGATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTTATGTTCTGCCCCTTCAAACTCTCAGAGGATGGGATTGAGATGCAGTTTGCAACAAACCATCTTGGTCATTTTCTGTTGACAAACCTGCTTCTTGAAAAAATGAAACAAACTGCACAAGCCACGGGAATAGAGGGCAGGATCATAACTCTGTCATCAATTGCCCATAACTACACTTACAGAAAGGGGATTAGATTCAATAAGATCAATGAGCGAAAAGGTTATGGTGACAAGAAGGCTTATGGACAGTCCAAGTTAGCTAACATATTGCATACAAATGAGCTTTCTCAGCGCCTGCAGGAAGAGGGTGTGAACATCACAGCCAACTCAGTCCATCCAGGAGTGATAATGACACCTCTTATGAGACATTCTTCTTACCTTATGCACTTTCTGAAGATCTTCACCTTTTACATATGGAAGAACGTCCCTCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAACGTGAAAGGTGTAACTGGGAAGTACTTTGAGGACTGCAATCCATGCAAACCAAGTGCGCATGCAAAAAACAAACATCTAGCAAAGAAACTCTGGGATTTCAGTAATGAGTTGATCAAATCAATTTCAAAAGTTTGA 972 0.4331 MVGVVSLVTGRAGPSGFGSASTAEQVTEGIDAANLTAIITGGASGIGLETTRVLALRKVHVIIAVRNMVSAKEAKQRILEENESARVDIMKLDLCSLNSVTSFVDNFLALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHLGHFLLTNLLLEKMKQTAQATGIEGRIITLSSIAHNYTYRKGIRFNKINERKGYGDKKAYGQSKLANILHTNELSQRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKIFTFYIWKNVPQGAATTCYVALHPNVKGVTGKYFEDCNPCKPSAHAKNKHLAKKLWDFSNELIKSISKV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00441 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Lapu6g00441 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lapu6g00441 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Lapu6g00441 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Lapu6g00441 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lapu6g00441 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Lapu6g00441 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Lapu6g00441 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lapu6g00441 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lapu6g00441 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lapu6g00441 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Lapu6g00441 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Lapu6g00441 323 Gene3D - 24 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00441 Lapu-Chr6 4548302 4553260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00441 35 244 Miscellaneous Gene Families AT2G29340 27.315 3.81e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00441 - K11153 gmx:100781156 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00441 6 4548302 4553260 Lapu6g00441 6 4548302 4553260 ECH