Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00417 ATGGCGGATTTAGAAAATTTGCTCTTGGAGGCAGCGGGGAGAACCCGACACTCTCGTCCAATCTCAAGAAGAGGACATGGTGATGGTGATAGTATCTCTAGGGGGCATGATTCGGATGATGAACATGATTATCCAGGCCCAAATCACTCTGGCTCGCGAGTTCCCCTAAAGAAGAGATTTGATCCGAAGGAAAGAGATGATGGCAAGGGAAGTAAGGAAGAAGGGGATGATGATGTTGGTGGCCGATTTGATCACAAGGGTGATAGCAGCGATGAATATGATTTTGGTGATGATCTTTATAAGAATGAAGATGACAGGCGTAAGCTTTCTGAGATGACTGAACTTCAAAGAGAGATGATATTATCTGATAGGGCTACCAAGAAGTATGATAAAGATTTATTGGGGAAGATAACATCAAACCGGGAGAAGGGAAAGACAACTATACCTGGGAAACAGACTTCACCTCCCCCACCATCTCGTGTGCGGTCATCAATCAGATCATTTGACAGGTCAACTGCCAAGGATGGTGCATTAAATGAATTGCGTGCGAAAAGATTAAAGCAGCAAGATTCAGAAGCAAACCGCAGACTAAGTGAGGTATCTAAAAGTTCAGGGTCTGGACATGTTTCACCAAAGGACAAACCTTCCTCTTCAACAAGTCTCACCAGCTCAAGTGATAGTGAAAGTGAAAATGGGTCCCTGAGTGATGATGCAGGGTTGAATGATGATGACATGATTGACAGTGATGATGACCGGATAATGTTAGGATCTGAAGGGCTTTCATTTGAGGATATAAAAGAAATCACCGTTTGCAGATCGAAACTAACAAAATGGTTTATGGAGCCCTTTTTTGAGGAGTTAATTGCTGGTTGTTTTGTAAGAGTGGGTATTGGTAGATCAAAGTTAGGGCCTATCTACAGGCTCTGCATGGTAAAAAATGTTGATGCCTCAGATTGTGATCGGCAGTATAAATTAGAAAATAAAATCACGCGCAAGTACTTAAATCTTGTCTGGGGAAATGAAACTTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGTGATTCTCTTCCACTTGAGGAGGAGTTTATCCAGTGGGTTAAGGAAGTAGAGCGAAGAGGCGGTCGGATGCCAACAAAGCAAGAAGTGGAAGAAAAAAAACAAGCTATACAAAATATCAACTTGTTTGTTTACTCAGCTGCTACTGTGAAGCAGATGTTACAAGAGAAAAAATCTGCCAAAATAAGACCACTAAATATTGCAGCTGAGAAGGATCGGCTAAGAACGCAATTAGAAATAGCACATAGTAAACAAAATAAAACTGAAGTGAATAGGATCATGACAAGGTTGCAAGAATTGGAGGAATCTCAGCAGTCTAAGGAAAAGGATGCCAGAGCTTTGAAGCTTTCTGAGATGAATAAAAAGAACAGGTTTGAGAACTTCAAAAATGCCTCTGAATTGAAGCCAGTAAATAAAGATTTGAAAGCAGGGGAGGCAGGTTATGATCCGTTTTCAAGGAGATGGACTAGATCAAGAAATTACTATGCCGCAAAATCAGCTGAAGAGTCTGCAGCTGAAAATAATAGTGCCAATGATGTGGTGGCTGATGCAGGCAGCTATCAGACGAAAACAGCTGTGACAGTGGTGGCTGGCATGGCGGCTACTGCTGCAGCTTTGGAAGCTGCTGCCGGTGCTGGGAAGTTAGTAGATACAAGTGCTCCGGTGGATCAAGGGACAGTGTCAAATGTGTTGCATGATTTTGAGCTGCCAATATCATTATCCGGCCTCCAAAACTTTGGTGGAGCCCAAGGAGTTAAGGCAGGGTTTATGGCAAGAAAACAGAAAATAGAAGCAACTGTTGGATTTCAAGTCCAGGAAAAAGATGGTAGGAGGGATGCGCGGACATTAACCATTAGTGATTACAAGAGAAGAATAGGGCTTTTTTGA 1944 0.4254 MADLENLLLEAAGRTRHSRPISRRGHGDGDSISRGHDSDDEHDYPGPNHSGSRVPLKKRFDPKERDDGKGSKEEGDDDVGGRFDHKGDSSDEYDFGDDLYKNEDDRRKLSEMTELQREMILSDRATKKYDKDLLGKITSNREKGKTTIPGKQTSPPPPSRVRSSIRSFDRSTAKDGALNELRAKRLKQQDSEANRRLSEVSKSSGSGHVSPKDKPSSSTSLTSSSDSESENGSLSDDAGLNDDDMIDSDDDRIMLGSEGLSFEDIKEITVCRSKLTKWFMEPFFEELIAGCFVRVGIGRSKLGPIYRLCMVKNVDASDCDRQYKLENKITRKYLNLVWGNETSAARWQMAMVSDSLPLEEEFIQWVKEVERRGGRMPTKQEVEEKKQAIQNINLFVYSAATVKQMLQEKKSAKIRPLNIAAEKDRLRTQLEIAHSKQNKTEVNRIMTRLQELEESQQSKEKDARALKLSEMNKKNRFENFKNASELKPVNKDLKAGEAGYDPFSRRWTRSRNYYAAKSAEESAAENNSANDVVADAGSYQTKTAVTVVAGMAATAAALEAAAGAGKLVDTSAPVDQGTVSNVLHDFELPISLSGLQNFGGAQGVKAGFMARKQKIEATVGFQVQEKDGRRDARTLTISDYKRRIGLF* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00417 647 FunFam RNA polymerase-associated protein RTF1 260 392 - -
Lapu6g00417 647 PANTHER UNCHARACTERIZED 261 644 - -
Lapu6g00417 647 MobiDBLite consensus disorder prediction 167 197 - -
Lapu6g00417 647 MobiDBLite consensus disorder prediction 119 139 - -
Lapu6g00417 647 Pfam Plus-3 domain 264 369 IPR004343 GO:0003677
Lapu6g00417 647 MobiDBLite consensus disorder prediction 54 104 - -
Lapu6g00417 647 MobiDBLite consensus disorder prediction 119 248 - -
Lapu6g00417 647 Gene3D - 260 391 IPR036128 GO:0003677
Lapu6g00417 647 SUPERFAMILY Plus3-like 261 391 IPR036128 GO:0003677
Lapu6g00417 647 SMART rtf1 259 371 IPR004343 GO:0003677
Lapu6g00417 647 Coils Coil 435 469 - -
Lapu6g00417 647 MobiDBLite consensus disorder prediction 198 236 - -
Lapu6g00417 647 ProSiteProfiles Plus3 domain profile. 259 394 IPR004343 GO:0003677
Lapu6g00417 647 MobiDBLite consensus disorder prediction 22 47 - -
Lapu6g00417 647 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00417 Lapu-Chr6 4178848 4180801 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00417 K15178 - gmx:100817324 899.812