Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00411 ATGGAGGAGGAGGGTGACATATACGAGGGTGTTAGAGCTGAGTTTCCTCTGTCGTTCGGGAAGCAATCGAAGCCTCAAACGCCTCTCGAAGCCATCCACAATGCCACACGTCGTGCCGCTTCCACTTCCAATCCCAATTCCAAAACCCCCAACCAACTTCCCTCTCTCTCCTCCTCTTCCAGGGAATGGCTCAATTCCCTCCGTCCTTCAAAACACCCTGTTCCACCGCCACCTCCCATCCACCACGACGCACCTCTCGTGGGGCCTCCGCCTCCTCCGCCCGCAGCTTCCCACGACGAGGACGATGACGAGGACGGCGACATGATTGGCCCGCCCCCGCCGCCACCGAATGCGTCGGAGTCCGAAGACGATTCGGATGAAGACGAGGTAGGGACCCGCTTCCGGATTCCCCTTAGCAACGAGATTGTTCTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCATACGGGATCAAGAGTGCTTTCTGGAAGCTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATGCACGATTGGAATCATTTCGACAGCTGGAGCCATCTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCAACTGCTGATCGCTTTTTGTGTGTTACTGGATCTGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAAGATGGCTCACTACGCATATGGGATGTTAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCGAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGATGGTAAAGGCATTGCCGGTGGTATAGGGGATGGTTCGATCCAGATTTGGAATATCAAGCCGGGTTGGGGGAGTAGGCCGGATCTACACATTGAAAAAGGTCATGAAGATGATATTAGCTGCCTGAAATTTTCTAGTGATGGAAGAATCTTATTGTCGAGGAGTTTTGATGGTTCACTGAAGGTTTGGGATCTACGCAAAATAAGGGAACCGTTAAAGGTATTTGGGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGGGAGCTCTACAGGAGGTTTATTGTGCTTCTTCGATAGAGTAAACCTTGAACTTGTTTCAAGAGTTGGCATATCATCCACTTGTAGTGTTATTCAGTGTCATTGGCATCCTAAACTGAATCAGATCCTTGCAACTACTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCCTAAGCGAGAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCATTACCACTATTTAGAGATCAGCCAAGCCGTAAGCGTCAGCGAGAGAAAGTACTAAAGGATCCATTGAAGTCCCATAAACCTGAATTACCAATGACAGGTCCTGGATTTGGTGGACGAGTTGGCACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGGGGCATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAAGGATCCAAAATTTATTGCTCCAGCATACGCAGAAACCCAACCTGAGCCAGTTTTTGCAAAGTCAGATTCTGAGGATGAAGAGAAATGA 1848 0.4724 MEEEGDIYEGVRAEFPLSFGKQSKPQTPLEAIHNATRRAASTSNPNSKTPNQLPSLSSSSREWLNSLRPSKHPVPPPPPIHHDAPLVGPPPPPPAASHDEDDDEDGDMIGPPPPPPNASESEDDSDEDEVGTRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLESFRQLEPSEGHQVRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKGIAGGIGDGSIQIWNIKPGWGSRPDLHIEKGHEDDISCLKFSSDGRILLSRSFDGSLKVWDLRKIREPLKVFGDLPNHYGQTNIAFSPDEQLFLTGTSVERGSSTGGLLCFFDRVNLELVSRVGISSTCSVIQCHWHPKLNQILATTGDKSQGGTHILYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00411 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Lapu6g00411 615 CDD WD40 143 462 - -
Lapu6g00411 615 Gene3D - 137 233 IPR015943 GO:0005515
Lapu6g00411 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 287 IPR001680 GO:0005515
Lapu6g00411 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 374 - -
Lapu6g00411 615 SMART WD40_4 282 326 IPR001680 GO:0005515
Lapu6g00411 615 SMART WD40_4 235 278 IPR001680 GO:0005515
Lapu6g00411 615 SMART WD40_4 333 372 IPR001680 GO:0005515
Lapu6g00411 615 SMART WD40_4 183 223 IPR001680 GO:0005515
Lapu6g00411 615 SMART WD40_4 137 176 IPR001680 GO:0005515
Lapu6g00411 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 374 IPR001680 GO:0005515
Lapu6g00411 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 280 - -
Lapu6g00411 615 MobiDBLite consensus disorder prediction 18 130 - -
Lapu6g00411 615 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Lapu6g00411 615 Gene3D - 234 473 IPR015943 GO:0005515
Lapu6g00411 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
Lapu6g00411 615 MobiDBLite consensus disorder prediction 511 532 - -
Lapu6g00411 615 FunFam WD repeat-containing protein 70 233 475 - -
Lapu6g00411 615 MobiDBLite consensus disorder prediction 594 615 - -
Lapu6g00411 615 FunFam Nucleotide binding protein 89 232 - -
Lapu6g00411 615 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Lapu6g00411 615 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Lapu6g00411 615 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Lapu6g00411 615 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Lapu6g00411 615 MobiDBLite consensus disorder prediction 20 66 - -
Lapu6g00411 615 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 614 - -
Lapu6g00411 615 SUPERFAMILY WD40 repeat-like 126 461 IPR036322 GO:0005515
Lapu6g00411 615 MobiDBLite consensus disorder prediction 70 95 - -
Lapu6g00411 615 MobiDBLite consensus disorder prediction 511 543 - -
Lapu6g00411 615 Pfam WD domain, G-beta repeat 338 372 IPR001680 GO:0005515
Lapu6g00411 615 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Lapu6g00411 615 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Lapu6g00411 615 Pfam WD domain, G-beta repeat 300 326 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00411 247 439 Miscellaneous Gene Families AT5G08390 24.742 2.66e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00411 K24752 - gmx:100815380 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00411 6 4129121 4133358 Lapu6g00411 6 4129121 4133358 ECH