Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00398 ATGGCGTCGTCTTATCCTGGTTCCGTTAGTGCCACACAGGTTGGCTCTTACTTCGTCGGACAGTACTATCAGATTCTCCGTCAGCAGCCGAATCTTGTTCACCAGTTTTACTCTGATTCCAGTAGCATGATTCGTGTCGACGGAGATTCCGTTGAAACCGCTCATGATGTGTTGCAAATTCATTCAATTGTCTCATTACTGAGTTTTACTGCGATTGAGATCAAGACAATCAATTCTCTCGACTCCTGGGATGGAGGTGTCCTTGTCATGGTCTCAGGTTCTGTGAAGTTAAAGGATATCATTGGGAGGCGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCCCAGGAGAAGGGCTACTTTGTTCTGAATGATATCTTTCATTTTGTTGAAGAGGGAGTTACGTACCCAAATATGGCACCAGTGGCATCCGAAGCAATTGACACACAACCGCATGTGTCTGCATCTCTCGCAGAGCCACTCGCTTCAGACTACGGTTTGGAGGAAGAAGCGCAGGAATATGTCAACTCTGTTCATCTAGATGATGATACAGTGGACAAGTATAGTCTTCCTGAGCACCCCCAGCAGCTACATGAAGATCTTGAAACCGAAATTGTTGTGGAGGAAACTTCAGAACAGGAGACATCTCCACAAATTCACAGTGTTGCACATGCTGTCCAAGAACCACCTGTTGCTCTTGTGGAAGAGTCTTTCGAAGAGCCTCCTAAGAAAACTTACGCCTCTATTTTACGAGTCTCCAAAGGGCAGCCTGTGTTGTCAGCTGCTCCACAGCATGTTCCACAATATTCTTTTAAAAGTGCTCCACCTCCTTCAGAGTTGAACCATGTAGCACAACCTGCTATTCAGCAGTCAAGCCCTGCATCTATGTATGTCCCCGAATCTGGGTTGGAGGCCGCAGATGAAGGCTATGGACTAGAAGATGAAGGTGAAGTAACCTCTGTCTACGTGAGAAACTTGCCTGCTAATGTTACTGAAGCGGAGATTGACCAGGAATTTAAGAATTTCGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTTCGAAAGGAAATCGGAGTGTGCTATGCATTTGTAGAATTTGAAGACATCATTGGTGTTCAAAATGCGCTTCAGGCTTCTCCAATTCAGTTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGGCAGTGCAATTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTACCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGCTAGGAACATGGGAAGGGGAAGTAATCAGGATAATTCAGACTACTCCAGACTAAGAGGCGATGGTTATCTTCAGCGTGGCTCACGATGA 1359 0.4636 MASSYPGSVSATQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLSFTAIEIKTINSLDSWDGGVLVMVSGSVKLKDIIGRRKFVQTFFLAPQEKGYFVLNDIFHFVEEGVTYPNMAPVASEAIDTQPHVSASLAEPLASDYGLEEEAQEYVNSVHLDDDTVDKYSLPEHPQQLHEDLETEIVVEETSEQETSPQIHSVAHAVQEPPVALVEESFEEPPKKTYASILRVSKGQPVLSAAPQHVPQYSFKSAPPPSELNHVAQPAIQQSSPASMYVPESGLEAADEGYGLEDEGEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAIRGGRRGRGRGSYQADAPRGRFGARNMGRGSNQDNSDYSRLRGDGYLQRGSR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00398 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 443 IPR039539 -
Lapu6g00398 452 SMART rrm1_1 319 391 IPR000504 GO:0003723
Lapu6g00398 452 Gene3D - 5 132 - -
Lapu6g00398 452 FunFam Nuclear transport factor 2 family protein 307 446 - -
Lapu6g00398 452 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Lapu6g00398 452 SUPERFAMILY RNA-binding domain, RBD 315 423 IPR035979 GO:0003676
Lapu6g00398 452 CDD NTF2 10 130 IPR018222 -
Lapu6g00398 452 MobiDBLite consensus disorder prediction 394 452 - -
Lapu6g00398 452 Gene3D - 305 446 IPR012677 -
Lapu6g00398 452 CDD RRM_SF 320 391 - -
Lapu6g00398 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Lapu6g00398 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Lapu6g00398 452 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Lapu6g00398 452 FunFam Nuclear transport factor 2 family protein 5 132 - -
Lapu6g00398 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 383 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00398 Lapu-Chr6 3996367 4002794 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00398 - - gmx:100787900 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00398 6 3996367 4002794 Lapu6g00398 6 3996367 4002794 ECH