Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00397 ATGGCAGATAGTGAATCCGTTGTTACCGAAGCATCTGCTCATTCCGCTGCTGAGACGTATGCTTCGACTGGTTATGCCGAGTCTGGCTCAAATCCTGCTCTCGAGGCGGGTGCTACTGTTGATCAACCTGCTGGAGAAGGTGCTCAGTCCACTTCAACCTATGGATTTGGTTATTCTAATGCTGGTGATGTGAATGCGTATACTGGGGATCCGAATTCTGTTTTACAACAAGCTCAATTCAATGCAACTGGTGATTCGAAGCCAGCTGGTGGAGTGCCTGATGCTAACGAGACCTCTGCTGGGGTTGGAAGCACTGCTGCTGAACCTGCTTTGGTTTCTGACTACAGTTCATCTGTAAATGGTGGTGCGGTCAGTGCGGTGACAAATTCTGCTGGACTTGAAAATGGAAATGCTTTGGAAAACGTTGACGGGTCAGCTGATGAAAAACAACTTGCAGATGGCTATGCAGCTGCCTTGTCTGCTGAGGAAGATCGACTATGGAATATTGTAAGAGCTAATTCTTTAGATTTCAGTGCCTGGACTTCCTTGATTGAAGAGACAGAGAAGGTAGCCGAGGACAATATTCTGAAGATTCGAAGAGTTTATGATTCCTTTCTAGCAGAATTTCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCACGACTTGGCTCTATAGATAAAGTTGTTGAAGTGTATGAGCGTTCTGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAAGCACGTATGGGGATCCAGACACTGTTCGTAGAATGCGTGCAACAGTGGTATCTCCCTTGTATGGCGGAAAAGCTTTGATGGGATTACATGCCAGAATGTTTTCCATTCTGATGGCTAAGATGGCCTCTATGACTGCTCCATTTCTCAGACATAGTATGATTTATTGCAGGAAGGTAAATGCAGCGTTTGGATATTATCTTTCCTTTCCCCTCTGGGATAAATACATTGAATATGAGTACATGCAACAAGACTGGGCCCGCCTTGCCATAATATACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGCTTCAAAGAGTTAGCTGGAAACCGACCTTTGTCAGAGTTACGAACTGCTGAAGAAGCTGCTGCAAGTGTTGCTTCGGAGTCTACTGGACAGGGTACTGAGGGAGAGGTTCATCCTGATGGTGCAGACAAGTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGAAGAGTTGGAGAAGTATATCGCCATTAGAGAAGAAATGTATAAAAAGGCTAAAGAGTTCGATTCTAAGATCATTGGTTTTGAAACAGCCATCCGGAGGCCCTATTTTCATGTACGGCCTCTCAACGTTGGAGAGCTTGAAAATTGGCACAACTATCTGGATTTTTTAGAAAGGGAAGGAGACTTAAGCAAGATTGTCAAGTTGTATGAGAGGTGTGTCATTGCATGTGCCAATTATCCCGAGTATTGGATACGCTACGTTTTGTGTATGGAAGCCAGTGGAAACATGGATCTTGCAAATAATGTTCTTGCCCGAGCCACTCAAGTCTTTGTTAAGAGACAACCAGAGATACATCTTTTTTGTGCCCGGTTCAAGGAGCAGAATGGAGATATAGATGGTGCTAGAGCTGCGTATCAACTTGTGCATACTGAAACTTCCCCTGGTCTTCTTGAAGCAATAATCAGGCATGCCAGTATGGAACACCGATTGGGAAAAATAGAGGATTCCTTCTCCTTGTATGAGCAAGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAGACATTGCCGATGTTGTTTGCTCAGTATTCTCGATTTGTATATTTGGCTTCTGGGAATGCAGAGAAGGCAAGACAGATTCTTGTTGAGGGTCTGGAGAATGTTGTGTTGTCAAAACCACTACTTGAGGCTTTGTTGCATTTTGAGGCTATTCAACCCTTTCCAAAGCGAGTTGATATTGACTTTCTGGAGTCATGGGTTTGCAAATTCATAATGCCTAACTCAGAGAGTCCTGGTGTTGCAAGTGCAATCGAGCGTGAAGAACTTTCTAGTATTTTTCTGGAGTTTTTAAATCTTTTTGGAGATGTTCAATCAATCAAGAGGGCTGAGGATAGACATGCCAAATTGTTTTTGCCACACAGAAGCATGTCAGAGTTGAAAAAACGTCATGCTGAGGATTTCTTGGCTTCCGACAAAGTAAAACTGTCAAGAACTTATTCTGTTCAATCACCTGCCCAATCTGTGATTGGTGCGTATCCAACTGCACAGAACCAATGGACTAATTATGGTGTACAACCTCAAACTTGGCCTCCGGTTACACAAGCACAAGGGCAACAGTGGACTGCTGGCTACACCCAGCAGGCTTCCTATGGGGCTTATGCTGGATATGGCGGCAATTATGCAAATTCTCAATTGCCTACATCAGTTCCACCAAGTACTGCATATGGAGCCTATCCTCCTACATATCCTGCACAGCCAGCTGTGCCTCCACAGAACTATGCACAACCTGTTGCAGCCCCTGCACAGCAACCTGCCGCAGTTCCTCAAGCCTATTACGGGAGTTATTACTAA 2616 0.4404 MADSESVVTEASAHSAAETYASTGYAESGSNPALEAGATVDQPAGEGAQSTSTYGFGYSNAGDVNAYTGDPNSVLQQAQFNATGDSKPAGGVPDANETSAGVGSTAAEPALVSDYSSSVNGGAVSAVTNSAGLENGNALENVDGSADEKQLADGYAAALSAEEDRLWNIVRANSLDFSAWTSLIEETEKVAEDNILKIRRVYDSFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERSVQGVTYSVDMWLHYCIFAISTYGDPDTVRRMRATVVSPLYGGKALMGLHARMFSILMAKMASMTAPFLRHSMIYCRKVNAAFGYYLSFPLWDKYIEYEYMQQDWARLAIIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTAEEAAASVASESTGQGTEGEVHPDGADKSPKSVSAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFLEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGNMDLANNVLARATQVFVKRQPEIHLFCARFKEQNGDIDGARAAYQLVHTETSPGLLEAIIRHASMEHRLGKIEDSFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVVLSKPLLEALLHFEAIQPFPKRVDIDFLESWVCKFIMPNSESPGVASAIEREELSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKVKLSRTYSVQSPAQSVIGAYPTAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANSQLPTSVPPSTAYGAYPPTYPAQPAVPPQNYAQPVAAPAQQPAAVPQAYYGSYY* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00397 871 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 147 853 - -
Lapu6g00397 871 SMART hat_new_1 227 259 IPR003107 GO:0006396
Lapu6g00397 871 SMART hat_new_1 341 374 IPR003107 GO:0006396
Lapu6g00397 871 SMART hat_new_1 516 549 IPR003107 GO:0006396
Lapu6g00397 871 SMART hat_new_1 627 659 IPR003107 GO:0006396
Lapu6g00397 871 SMART hat_new_1 193 225 IPR003107 GO:0006396
Lapu6g00397 871 SMART hat_new_1 482 514 IPR003107 GO:0006396
Lapu6g00397 871 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 461 753 - -
Lapu6g00397 871 MobiDBLite consensus disorder prediction 388 416 - -
Lapu6g00397 871 MobiDBLite consensus disorder prediction 82 104 - -
Lapu6g00397 871 Gene3D Tetratricopeptide repeat domain 168 377 IPR011990 GO:0005515
Lapu6g00397 871 Gene3D Tetratricopeptide repeat domain 462 761 IPR011990 GO:0005515
Lapu6g00397 871 SUPERFAMILY TPR-like 170 269 IPR011990 GO:0005515
Lapu6g00397 871 MobiDBLite consensus disorder prediction 23 51 - -
Lapu6g00397 871 SUPERFAMILY TPR-like 426 729 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00397 Lapu-Chr6 3980054 3991667 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00397 K13217 - gmx:100787373 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00397 6 3980054 3991667 Lapu6g00397 6 3980054 3991667 ECH