Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00349 ATGGATTCGTCAAACGACGTGGCTTTGATTTCGTCGGAGATGGAGAAGTTCCTGTGCGAATTGTTGCTGGATTCATCCCAGCCAATTTCGGAGCGGTTCAGAGCACTCTTCTCTCTCCGCAACCTCAAAGGCCCTGCCCCTCGCCACGCCCTTATTCTCGCCACAAGGGATTCATCGAATTTGTTGGCGCACGAAGCTGCATTTGCGTTGGGTCAAATGCAGGAATTGGAAGCCATTCCTGCTTTGGCTTCAGTTCTGAATGATCTTTCTTTGCATCCCATTGTTCGCCATGAGGCAGCTGAGGCACTTGGTGCTATTGGTTCAGAAGGTAATGTTCCTCTCCTGAAGAACAGTTTGGATTCGGATCCGGCCGAGGAGGTACGAGAAACGTGTGAGTTGGCTCTTCAACGAATTCAGCATTTAAAAGATGCTGGTAATACCAATGAATTGGCTGCAACTGAAATATCGCCTTTTAAGTCTGTTGATCCAGCCGCGCCAGCGACCTCTTGTACTTCTGTTCCACAACTGAGGTTTCTTGGGGAAGTACTTCTTGATGAAGAAAAAGGGATGCATGAACGCTATGCAGCTCTTTTTGCACTTCGCAATGATGGTGGAAATGAAGCTGTTGCTGCTATTATTGATTCCTTGGGCTCGAAAAGTGCTCTACTGCGCCATGAGATGTGGAATCATGCTGCTTGCATCTTGAAGAAAGCTAATCAGATAAAATTAGTTGAAGATGTTGAAAACTTAGAGTCTCTTCGTTGGGAAGATCAGCAGAACATCAGAAAATACATAGAAAGTGGCAGTGGCGGCGGCAGCAGCAGCAGTGCCGCAAAATCAGGCTCAAAAGCTGTCAAAGATACTGAATGTGGTATTGAAGTTTCACAGACTTCTCGTGCTACATGCAGGGATTGCAGCCAAAAAATTATCAAAGGAGAGGTTCGTATATCTACTAAGCCTGATGGTCAAGGTGCAAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATGGAACTATCGCCATCTATTCAAGTGGATAAGTTATCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTTGCTAAGAAGTGTGTAAGTGGTACAAACATTGAGACTGAAAAGGGTAAAGAATCCGTACAACAGCACACTTCCAAAGGTGGTATAAAACGGGGGAAAGATGTTGACAGTGAGCGAAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTCTGCGAGCAGTGCAGTGTCAGTGAAGAATTATAATGAAACAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAAATCCAGAGCAAAGAAATCTGGGCTCTGAAGGATGATCTCAAAAAGAATGTGACAACAACAGATTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCTTGCTTTCTGCGTTACTCTGGAGGGATGTATCGTTGCACTGGATACATTTCTGAGTGGAGTAAATGTTCTTACTCTACCTGCGAACCAAAACGTGTTGAAGGAAAGTGGAAAATCCCAGAAGAAACAATTAATCAGTACCTTAAAAAGTGGTTCAAATCTCAGAAAGGGAAGAAACCAATTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATTACTGCTACTCAGCATCAATCATCAAACACTGAAAATTTTCGAGATATCAAAGTTGCTATCTGTGGATTAGCTAATGACACTATTAAAGAATGGAAACGCAAAATTGATGGCATGGGTGGAATTTTTCATGCCAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGTGCTCAATGATGAAGCTGAGATGCGGAAGGCAAAGAGGATGAAAATACCAATAGTCAGAGAGGACTACTTGGTTGACTGCATACAAAGAAAGAAGAGACTTCCATTTGATATGTACAAGGTGGAAATGATTGGTGAGACTTCTAGCATGGTCACCATTAAAGTGAAGGGACAAAGTGCTGTTCATGAGGCTTCTGGCCAACAGGAGTCCGGCCACATACTTGTGGAAGGAAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGTTACTACATTCTCCAGATAATTGAAGAAGATAAGGGGTCAGATTGCTCTGTGTTTCGTAAATGGGGTCGAGTAGGAAATGACAAGATTGGAGGAATTAAACTGATGGATAACATGTCAAAATCTGATGCAATCTGTGAATTCAAAAGATTATTCTATGAGAAGACTGGAAACCCTTGGGAGGCATGGGAACAAAAGACCATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGTGTTAACAAACAGGTATCAAAAAAGAAAAGAAATGACAATGACAGCAAACTTCCCTCGCCATTAATAGAATTGATTAAGATGCTCTTCAATGTGGAAACTTACAGATCTGCCATGATGGAGTTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTAAGCAAAAGCAATATTCAAAAGGGTTTTGAAGCATTGACAGAGATACAAAATCTGTTTAACATTGGTAATCAGGATCCGTCAGTCAAGGAAAGCTTACTTATTAATGCCAGCAACCGGTTCTTCACCGTGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCCAACAATGAGGATTCAATTGATGATAGTTATAGGAAGCTCCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGATTTTTGTTTAATTGAAAAGTTTCTCCATAATACTCATGCCCCTACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACCGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCAGCAACTGGCTATATGTTTGGCAAAGGGGTGTACTTTGCTGACCTGGTCAGCAAAAGTGCCCAGTATTGCTTCACTGACAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCTCTTGGAAACATCTACGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCCGAAGGAAAGCACTCTACTAAAGGACTGGGCAAAAAAATGCCTCAAGAATCGGAATATGCGAAGTGGAGGGGCGATGTCACTGTTCCTTGCGGCAAACCAGTGCCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACCGCCCAAGTAAGTTTCAAGTCTGGTATTGTTGTCATATAA 3510 0.4194 MDSSNDVALISSEMEKFLCELLLDSSQPISERFRALFSLRNLKGPAPRHALILATRDSSNLLAHEAAFALGQMQELEAIPALASVLNDLSLHPIVRHEAAEALGAIGSEGNVPLLKNSLDSDPAEEVRETCELALQRIQHLKDAGNTNELAATEISPFKSVDPAAPATSCTSVPQLRFLGEVLLDEEKGMHERYAALFALRNDGGNEAVAAIIDSLGSKSALLRHEMWNHAACILKKANQIKLVEDVENLESLRWEDQQNIRKYIESGSGGGSSSSAAKSGSKAVKDTECGIEVSQTSRATCRDCSQKIIKGEVRISTKPDGQGAKGLAWHHAKCLMELSPSIQVDKLSGWNSLSSSDQSAVSDFAKKCVSGTNIETEKGKESVQQHTSKGGIKRGKDVDSERKSKVAKAKGDVSASSAVSVKNYNETGEACDLEKKMEIQSKEIWALKDDLKKNVTTTDLREMLEANGQDSTGSELDLRDRCADGMMFGALGLCPICSCFLRYSGGMYRCTGYISEWSKCSYSTCEPKRVEGKWKIPEETINQYLKKWFKSQKGKKPIRILPLPSPRKSAESQITATQHQSSNTENFRDIKVAICGLANDTIKEWKRKIDGMGGIFHAKVKKDTNCLVVGGVLNDEAEMRKAKRMKIPIVREDYLVDCIQRKKRLPFDMYKVEMIGETSSMVTIKVKGQSAVHEASGQQESGHILVEGKSIYNTTLNMSDLSTGINSYYILQIIEEDKGSDCSVFRKWGRVGNDKIGGIKLMDNMSKSDAICEFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKKRNDNDSKLPSPLIELIKMLFNVETYRSAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLFNIGNQDPSVKESLLINASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNEDSIDDSYRKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNIYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYAKWRGDVTVPCGKPVPSNVKASELMYNEYIVYNTAQVSFKSGIVVI* 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00349 1169 Gene3D - 491 551 IPR038650 -
Lapu6g00349 1169 SMART PADR1_2 479 532 IPR012982 GO:0008270
Lapu6g00349 1169 SUPERFAMILY ADP-ribosylation 958 1163 - -
Lapu6g00349 1169 Gene3D BRCT domain 579 681 IPR036420 -
Lapu6g00349 1169 FunFam Poly [ADP-ribose] polymerase 283 390 - -
Lapu6g00349 1169 FunFam Poly [ADP-ribose] polymerase 581 682 - -
Lapu6g00349 1169 Pfam PADR1 (NUC008) domain 481 530 IPR012982 GO:0008270
Lapu6g00349 1169 SMART WGR_cls 713 797 IPR008893 -
Lapu6g00349 1169 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 825 959 IPR036616 GO:0003950
Lapu6g00349 1169 Gene3D - 959 1164 - -
Lapu6g00349 1169 Gene3D - 418 490 - -
Lapu6g00349 1169 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 425 564 IPR047572 GO:0008270
Lapu6g00349 1169 CDD parp_like 825 1163 - -
Lapu6g00349 1169 SUPERFAMILY WGR domain-like 680 807 IPR036930 -
Lapu6g00349 1169 FunFam Poly [ADP-ribose] polymerase 817 958 - -
Lapu6g00349 1169 Pfam HEAT repeats 53 135 - -
Lapu6g00349 1169 Gene3D - 9 157 IPR011989 -
Lapu6g00349 1169 ProSiteProfiles PARP alpha-helical domain profile. 824 942 IPR004102 GO:0003950
Lapu6g00349 1169 FunFam Poly [ADP-ribose] polymerase 491 552 - -
Lapu6g00349 1169 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 290 364 IPR001510 GO:0003677|GO:0008270
Lapu6g00349 1169 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 293 364 IPR001510 GO:0003677|GO:0008270
Lapu6g00349 1169 ProSiteProfiles WGR domain profile. 702 802 IPR008893 -
Lapu6g00349 1169 FunFam Poly [ADP-ribose] polymerase 418 490 - -
Lapu6g00349 1169 FunFam Poly [ADP-ribose] polymerase 959 1168 - -
Lapu6g00349 1169 SMART zf_PARP_3 209 266 IPR001510 GO:0003677|GO:0008270
Lapu6g00349 1169 SMART zf_PARP_3 293 367 IPR001510 GO:0003677|GO:0008270
Lapu6g00349 1169 MobiDBLite consensus disorder prediction 391 410 - -
Lapu6g00349 1169 SUPERFAMILY ARM repeat 27 138 IPR016024 -
Lapu6g00349 1169 Gene3D - 814 958 IPR036616 GO:0003950
Lapu6g00349 1169 ProSiteProfiles PARP catalytic domain profile. 949 1169 IPR012317 GO:0003950
Lapu6g00349 1169 ProSiteProfiles SAP motif profile. 453 487 IPR003034 -
Lapu6g00349 1169 Pfam Poly(ADP-ribose) polymerase catalytic domain 969 1162 IPR012317 GO:0003950
Lapu6g00349 1169 SUPERFAMILY BRCT domain 585 673 IPR036420 -
Lapu6g00349 1169 Coils Coil 124 144 - -
Lapu6g00349 1169 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 228 269 IPR001510 GO:0003677|GO:0008270
Lapu6g00349 1169 MobiDBLite consensus disorder prediction 378 410 - -
Lapu6g00349 1169 CDD WGR_PARP1_like 703 809 - -
Lapu6g00349 1169 Gene3D - 217 282 IPR036957 GO:0003677|GO:0008270
Lapu6g00349 1169 Gene3D - 283 390 IPR036957 GO:0003677|GO:0008270
Lapu6g00349 1169 SMART BRCT_7 585 663 IPR001357 -
Lapu6g00349 1169 SMART E-Z type HEAT repeats 60 89 IPR004155 -
Lapu6g00349 1169 SMART E-Z type HEAT repeats 190 219 IPR004155 -
Lapu6g00349 1169 SMART E-Z type HEAT repeats 29 58 IPR004155 -
Lapu6g00349 1169 SMART E-Z type HEAT repeats 93 122 IPR004155 -
Lapu6g00349 1169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 273 - -
Lapu6g00349 1169 PANTHER DNA LIGASE 289 1161 - -
Lapu6g00349 1169 Pfam WGR domain 713 792 IPR008893 -
Lapu6g00349 1169 ProSiteProfiles BRCT domain profile. 583 673 IPR001357 -
Lapu6g00349 1169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 290 369 - -
Lapu6g00349 1169 FunFam Deoxyhypusine hydroxylase 7 156 - -
Lapu6g00349 1169 Pfam Poly(ADP-ribose) polymerase, regulatory domain 825 955 IPR004102 GO:0003950
Lapu6g00349 1169 Pfam BRCA1 C Terminus (BRCT) domain 586 660 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00349 Lapu-Chr6 3393144 3409591 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00349 K24070 - gmx:100815900 1674.06