Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00338 ATGGCCGAGCACGGTTTTGATGGACATGATGAAGGATATGTGCCTGAGGACCCTAATTTTCCTCATAATCATTCTGATGAACATGATGTAGGGACTGTGATTGATAGCTCAGGATTTCCTCACCTGCTGCCTGATGAACATGATGAAGTCAATTTGGTGGAGGATGCCAATTTTCCTGAAAATCATTTTGATGAACATGAACATGATATTGGAGGTTTGCCTGGGGACACGGATTCTCCTCAGCAAGAGCATGTTGAGGAAGACCATGGTGCTGGAGACGTGTCTGAGAATTTTGATTCTTCGCCGATACAGGGATCCGAGGTTGTTTTGAAAGGCAATGAAATTAAAAAGTGGCCGGGGTGGCCTGGAGAGAATGTTTTCAGGATGTTGGTTCCAGTGCAAAAGGTTGGTAGTATTATCGGCCGAAAGGGTGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCACCAGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCTAAAGAAGAGCCAGATCGGCCCGTGCCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGCAGATAGCGCATTGGCTGCTGGACGATCAGTTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGCACCATACGTGTTCTTGGATCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAGTTGAACTCATTGCTGTTCATTTACGCAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTCTTTGAAACCCAGATGCAGATGTCAGATGTTAGAGCTAACCAAAATGGTCCGCCACATCAAAATTGGGGTCCTCCTCAAGGGTTTCCTGCTCCTGCTGCTGGTGGTGCTGGTGGAGGACCTGCTTTTGCGCCTAATCAACAATATATGCCACCTACACATCACTATGATAGTTATTACCCACCCACTGAGTTGCCTTCCATGGATAAGCACCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCGTCTATAGGAATTCACTCATCAAGTGCACAACCACACCAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTATCATATGCAGATGCTGTTATAGGAGCATCTGGCACTAATATCAGCTATATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTTCCAGGGGAGATGACTGTCGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGAATTTTATGGCTGAAGCTGCAAATGCGACACAGGATCCAATGGGTGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTTTATGCATCTCCCCCCTCTAGCACTGGTGCTCATACAGGTCATGTGCCTTCTGCAGATTATGGGCCCGTATACGGCACCAATTATGGGTATTAA 1584 0.4596 MAEHGFDGHDEGYVPEDPNFPHNHSDEHDVGTVIDSSGFPHLLPDEHDEVNLVEDANFPENHFDEHEHDIGGLPGDTDSPQQEHVEEDHGAGDVSENFDSSPIQGSEVVLKGNEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPVPPAVDGLLRVHKQVINVDRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAVELIAVHLRKFLVDRSIVGVFETQMQMSDVRANQNGPPHQNWGPPQGFPAPAAGGAGGGPAFAPNQQYMPPTHHYDSYYPPTELPSMDKHLHQGPPPAYARDASIGIHSSSAQPHQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPMGGSVSQGYSAYPTNAPVYASPPSSTGAHTGHVPSADYGPVYGTNYGY* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00338 527 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 116 487 - -
Lapu6g00338 527 CDD KH-I_PEPPER_like_rpt3 401 469 - -
Lapu6g00338 527 CDD KH-I_PEPPER_rpt2_like 217 289 - -
Lapu6g00338 527 Pfam KH domain 403 466 IPR004088 GO:0003723
Lapu6g00338 527 Pfam KH domain 218 284 IPR004088 GO:0003723
Lapu6g00338 527 Pfam KH domain 127 179 IPR004088 GO:0003723
Lapu6g00338 527 Coils Coil 458 478 - -
Lapu6g00338 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 391 472 IPR036612 GO:0003723
Lapu6g00338 527 Gene3D K Homology domain, type 1 388 477 IPR036612 GO:0003723
Lapu6g00338 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 212 297 IPR036612 GO:0003723
Lapu6g00338 527 SMART kh_6 400 470 IPR004087 GO:0003676
Lapu6g00338 527 SMART kh_6 123 196 IPR004087 GO:0003676
Lapu6g00338 527 SMART kh_6 214 289 IPR004087 GO:0003676
Lapu6g00338 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 116 179 IPR036612 GO:0003723
Lapu6g00338 527 ProSiteProfiles Type-1 KH domain profile. 124 191 - -
Lapu6g00338 527 MobiDBLite consensus disorder prediction 62 102 - -
Lapu6g00338 527 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Lapu6g00338 527 ProSiteProfiles Type-1 KH domain profile. 215 284 - -
Lapu6g00338 527 CDD KH-I_PEPPER_rpt1_like 124 192 - -
Lapu6g00338 527 MobiDBLite consensus disorder prediction 1 28 - -
Lapu6g00338 527 Gene3D - 124 293 - -
Lapu6g00338 527 MobiDBLite consensus disorder prediction 80 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00338 Lapu-Chr6 3249830 3255417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00338 K21444 - gmx:100799901 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00338 6 3249830 3255417 Lapu7g00727 7 8521117 8531459 PCT