Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00307 ATGGCGGAGAACGGCGACGGCGCCGAGGAGTACCTCTTCAAGGTGGTGCTCATCGGCGACTCCGCGGTCGGCAAGTCCAACCTCCTCTCGCGGTTCGCGCGGAACGAGTTTGACAGCAACTCCAAGGCCACGATTGGGGTGGAGTTCCAGACGCAGGTGGTGGAGATCGACGGCAAGGAGATCAAGGCGCAGATCTGGGACACTGCCGGCCAGGAGCGCTTCCGAGCCGTCACTTCCGCTTATTACAGAGGCGCCGTTGGAGCTCTCGTCGTCTACGATATCAGCAGGAGAGGCACCTTCGACAGCATCAAACGCTGGCTCGAAGAGCTCACCACTCAAAATGACAGCACCGTAGCCAGAATGTTGGTGGGAAATAAATGCGACTTGGAGAATATTAGAGAGGTAAGCACGGAAGAGGGCAAAAATCTTGCAGAAGAAGAGGGCTTGTTCTTTATGGAGACATCTGCACTCGATTCTACCAATGTCCAAACAGCTTTCGAGATTGTTATCCGCGAAATTTACAACAATATCAGCCGTAAAACATTGAACTCTGATTCTTACAAGGCTGAGTTGTCTGTGAATCGAGTAAGCTTGGTTAATGGTGCAGGATCAAAGCAAGGTCTTTCTTGTTGTTCTCGATGA 642 0.5202 MAENGDGAEEYLFKVVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQVVEIDGKEIKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDISRRGTFDSIKRWLEELTTQNDSTVARMLVGNKCDLENIREVSTEEGKNLAEEEGLFFMETSALDSTNVQTAFEIVIREIYNNISRKTLNSDSYKAELSVNRVSLVNGAGSKQGLSCCSR* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00307 213 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Lapu6g00307 213 FunFam ras-related protein RABA5a 5 211 - -
Lapu6g00307 213 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Lapu6g00307 213 SMART ran_sub_2 18 210 - -
Lapu6g00307 213 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Lapu6g00307 213 Gene3D - 7 211 IPR027417 -
Lapu6g00307 213 ProSiteProfiles small GTPase Ras family profile. 7 199 IPR001806 GO:0003924|GO:0005525
Lapu6g00307 213 PANTHER DRAB11-RELATED 9 211 - -
Lapu6g00307 213 CDD Rab11_like 10 174 - -
Lapu6g00307 213 ProSiteProfiles small GTPase Rab1 family profile. 8 211 - -
Lapu6g00307 213 SMART rab_sub_5 13 176 - -
Lapu6g00307 213 NCBIfam small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Lapu6g00307 213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 184 IPR027417 -
Lapu6g00307 213 SMART ras_sub_4 10 176 - -
Lapu6g00307 213 PRINTS Transforming protein P21 ras signature 36 52 - -
Lapu6g00307 213 PRINTS Transforming protein P21 ras signature 13 34 - -
Lapu6g00307 213 PRINTS Transforming protein P21 ras signature 116 129 - -
Lapu6g00307 213 PRINTS Transforming protein P21 ras signature 54 76 - -
Lapu6g00307 213 PRINTS Transforming protein P21 ras signature 151 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00307 Lapu-Chr6 2837385 2840907 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00307 K07976 - gmx:100808333 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00307 6 2837385 2840907 Lapu6g00307 6 2837385 2840907 PCT