Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00247 ATGTCCAAACAGAAAGACAACGTTTCCTTTTCCTTCCGCCCGCTGCGCAAGTACAGGCGCCCCGTGTCGGAGGTCCAGCGAATAGAGACCCTTTTCAACCGTTACTCCGATGAGAATGGTGTCATGACAGTCTCTCACCTCCTCCGTTTTCTGGTTGAGGTGCAGGGGGAAGAGAATACCACTGAGGAAGCACAGGCCATCATCGATGTGCACAAGCATCGAAGGTGCTTCAAATCTGAAAGGGGTCTCAAACTCCACAGTTTTTTGAACTATCTCTTCAGTGACACTAACCTACCTCTGTCACCTTTTCTTGAGATAGCCCAAGATATGTCTTTCCCCATGTCTCATTACTTCATTTATACTAGTCATAATTCCTATCTAACTGGGAACCAGATTAGCAGTAAGAGCAGTGACGAACCTATCATCAATGCACTGAGGAGAGGTGTAAGGGTGATTGAATTAGATTTATGGCCTAATGCATCAAAGGATGATGTGATTGTTCTTCATGGAGGGAATATGACATCTCCAGTAGCGCTGATAAAATGTTTAAGGTCTATAAATCAGAATGCCTTTGTCGCCTCAGAATATCCAGTTGTAATGAAGTTAGAGGATCACCTTTATCCCAATCTTTGGGCCAAAGTGGCTGTGATGCTTGCTCACACATTTGGAGACAAACTATTTTATCCTAGCCACGAAAACTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAAGCAGGATTATTATATCAACCAAACAATACCTTCATGCATACAAAGAAGTACAGGAAAAGGAGGAAGAATCAGAGAGAGGAAAACTTATAGATGATGAAGAAGAATCTAATTTTGTTGTACAGAACATTGCAGATGAAGACGATATCATACAAATTGAAGAATTACAATATGAAAGTTTAATTGTCATTCATGATGGGAAGCCTAAAGGTGGATTAAAAAATTGTCTCAAAGTTGATCATAATAAAGTGAAATGTCTGAGTTTAAGTGAGCTAGAACTTGCAATGGCAGTTGCAACTCTTGGAAAAGAAATTGTCAGGTATTGCTAA 1059 0.4042 MSKQKDNVSFSFRPLRKYRRPVSEVQRIETLFNRYSDENGVMTVSHLLRFLVEVQGEENTTEEAQAIIDVHKHRRCFKSERGLKLHSFLNYLFSDTNLPLSPFLEIAQDMSFPMSHYFIYTSHNSYLTGNQISSKSSDEPIINALRRGVRVIELDLWPNASKDDVIVLHGGNMTSPVALIKCLRSINQNAFVASEYPVVMKLEDHLYPNLWAKVAVMLAHTFGDKLFYPSHENLKEFPSPESLKSRIIISTKQYLHAYKEVQEKEEESERGKLIDDEEESNFVVQNIADEDDIIQIEELQYESLIVIHDGKPKGGLKNCLKVDHNKVKCLSLSELELAMAVATLGKEIVRYC* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00247 352 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 108 252 - -
Lapu6g00247 352 Gene3D Phosphatidylinositol (PI) phosphodiesterase 105 352 IPR017946 GO:0006629|GO:0008081
Lapu6g00247 352 Pfam Phosphatidylinositol-specific phospholipase C, X domain 110 252 IPR000909 -
Lapu6g00247 352 PRINTS Phospholipase C signature 139 159 IPR001192 GO:0035556
Lapu6g00247 352 PRINTS Phospholipase C signature 236 253 IPR001192 GO:0035556
Lapu6g00247 352 PRINTS Phospholipase C signature 113 131 IPR001192 GO:0035556
Lapu6g00247 352 Gene3D - 21 102 - -
Lapu6g00247 352 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 7 352 IPR001192 GO:0035556
Lapu6g00247 352 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 95 IPR015359 -
Lapu6g00247 352 SUPERFAMILY PLC-like phosphodiesterases 108 351 IPR017946 GO:0006629|GO:0008081
Lapu6g00247 352 SMART plcx_3 108 252 IPR000909 -
Lapu6g00247 352 SUPERFAMILY EF-hand 11 103 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00247 Lapu-Chr6 2079086 2081893 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00247 1 351 Acyl Lipid Metabolism Gene Families AT3G08510 49.471 2.04e-103 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00247 K05857 - gmx:100784534 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00247 6 2079086 2081893 Lapu6g00247 6 2079086 2081893 ECH
Lapu6g00247 6 2079086 2081893 Lapu6g00247 6 2079086 2081893 PCT