Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00199 ATGGCGGATCAGCTGTCGAAGGCTGAAGAATATGAGAAGAAAGCTGAGAAGAAGCTCAACGGCTGGGGTTTGTTTGGCTCCAAGTACGAGGATGCCGCCGATCTCTTCGATAAAGCCGCCAATTCCTTCAAGCTGGCTAAATCATGGGACAGAGCAGGAGCGACATACCTTAAGTTGGCAAGTTGCCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCATGTTGATGCTGCACATTGCTACAAGAAAACTAATATAAACGAGGCTGTATCTTGCTTAGACCGTGCTGTAAATCTTTTTTGTGACATTGGAAGACTCTCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTGTATGAGGCTGAACAGAATATTGAGCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAGGTGACAACTACGGCTAACCAATGCAAACAAAAAGTTGCTCAATTTGCTGCTCAGTTAGAACAGTATCAGAAGTCAATTGAGATTTACGAAGAGATAGCTCGACAATCCTTGAACAATAATTTATTGAAGTACGGTGTTAAAGGGCACTTGCTGAATGCTGGCATCTGCCAACTCTGTAAAGGGGACGTTGTTGCTATAACAAATGCACTAGAACGATATCAGGAATTGGATCCAACATTTTCGGGAACACGAGAATGTAGATTGTTGGCGGATATTGCTGCTGCTATTGATGAAGAAGATGTTGTGAAGTTTACTGATGTTGTGAAGGAATTTGATAACATGACCCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACCTGA 870 0.4195 MADQLSKAEEYEKKAEKKLNGWGLFGSKYEDAADLFDKAANSFKLAKSWDRAGATYLKLASCHLKLESKHEAAQAHVDAAHCYKKTNINEAVSCLDRAVNLFCDIGRLSMAARYLKEIAELYEAEQNIEQALVYYEKSADFFQNEEVTTTANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERYQELDPTFSGTRECRLLADIAAAIDEEDVVKFTDVVKEFDNMTPLDSWKTTLLLRVKEKLKAKELEEDDLT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00199 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Lapu6g00199 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Lapu6g00199 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Lapu6g00199 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Lapu6g00199 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Lapu6g00199 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Lapu6g00199 289 Coils Coil 111 131 - -
Lapu6g00199 289 FunFam Alpha-soluble NSF attachment protein-like 6 285 - -
Lapu6g00199 289 SUPERFAMILY TPR-like 6 280 IPR011990 GO:0005515
Lapu6g00199 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 4 279 IPR000744 GO:0006886
Lapu6g00199 289 Pfam Soluble NSF attachment protein, SNAP 6 278 - -
Lapu6g00199 289 Coils Coil 151 185 - -
Lapu6g00199 289 CDD SNAP 19 278 IPR000744 GO:0006886
Lapu6g00199 289 Gene3D Tetratricopeptide repeat domain 4 288 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00199 Lapu-Chr6 1674147 1678378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00199 K15296 - gmx:100814639 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00199 6 1674147 1678378 Lapu6g00199 6 1674147 1678378 ECH
Lapu6g00199 6 1674147 1678378 Lapu6g00199 6 1674147 1678378 PCT