Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00182 ATGTTGATAATACTTGTTTTTAAACCATGTGAATTAGAAATGTTTAGGCTTATAAAAGGAGAACGGAAAAAATGGTTGGAATTGGTTGTGATTAATATACTCTCATCTATATTGTTGTTGGCCGCTTGGGAAGTAATGGCCGATGAGGATGCTCCCAAACCAGTGGTTATCATCACAGGATGTTCCACGGGAGGCATAGGCCACGCGCTTGCGTGCGCGTTCGCGGAGAAGAAGTGCAGGGTGGTGGCGACGAGTAGGTCCCGGTCGAGCATGGCGGAGCTGGAACACGACCACAGGTTTTTGTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTACGCAGAGTGGTTGATGCTGTGGTCCAAACTTACGGTCGCATCGATGTGCTCGTTAACAACGCGGGTGTTCAGTGCGTGGGCCCACTCGCCGAGGTTCCTCTCTCTTCCGTCCAAAACACTTTCGACACCAATGTCTTCGGTTCCTTGAGAATGGTTCAGGCTGTTGTTCCTCATATGGCAACTAGGAAAAACGGGAAGATTGTGAATATTGGTAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTATACAGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGATTGGAACTTGGGCATTTTGGAATTGATGTTGTGAATGTTGTCCCCGGAGCTATCAAATCAAATATCGGAGATTCTGCCGTAGCCAGCTACAACCGCATGCCTGAATGGAAATTGTTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTACTTTTCTCAGAAGTCCAAATCAACCCCCACAGATGAGTTTGCTACAAACACTGTAGCTGCTATTCTTAAGGAGAAACCGCCGGCATGGTTTACCTATGGACATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTATTTTGAAGAAAGCAATGAAAGGCTGA 975 0.4615 MLIILVFKPCELEMFRLIKGERKKWLELVVINILSSILLLAAWEVMADEDAPKPVVIITGCSTGGIGHALACAFAEKKCRVVATSRSRSSMAELEHDHRFLLEELDVQSDESVRRVVDAVVQTYGRIDVLVNNAGVQCVGPLAEVPLSSVQNTFDTNVFGSLRMVQAVVPHMATRKNGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRLELGHFGIDVVNVVPGAIKSNIGDSAVASYNRMPEWKLFKPFEAAIRDRAYFSQKSKSTPTDEFATNTVAAILKEKPPAWFTYGHYSTVMAIMYHLPISVRDFILKKAMKG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00182 324 CDD 17beta-HSD-like_SDR_c 55 300 - -
Lapu6g00182 324 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Lapu6g00182 324 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Lapu6g00182 324 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Lapu6g00182 324 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Lapu6g00182 324 PRINTS Glucose/ribitol dehydrogenase family signature 219 236 IPR002347 -
Lapu6g00182 324 Coils Coil 91 111 - -
Lapu6g00182 324 Gene3D - 54 313 - -
Lapu6g00182 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Lapu6g00182 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Lapu6g00182 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Lapu6g00182 324 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 53 323 - -
Lapu6g00182 324 Pfam short chain dehydrogenase 55 239 IPR002347 -
Lapu6g00182 324 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 54 234 - -
Lapu6g00182 324 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 185 213 IPR020904 GO:0016491
Lapu6g00182 324 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 52 304 - -
Lapu6g00182 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 54 308 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00182 Lapu-Chr6 1516264 1518630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00182 57 228 Lipid Metabolism Gene Families AT1G67730 31.016 3.52e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00182 - - gmx:100789660 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00182 6 1516264 1518630 Lapu6g00182 6 1516264 1518630 ECH