Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00179 ATGTGGTGGCGGTTGCTGCTACTGTTCTTGTCGTTGTTGGAGCTAACGGCACGCGCAATGCCGCTTCCGATCACGTTTTCCGCGCGCCTCGTTCACCGGTTCGCCGACGAAATCAAACCAGTTCAAATTCCGACCGCCGACTGGCCGGACCGGCGGAGCATGCGCTACTTCCAGATGCTTCTCGCTGACGACATTCTCAGACGCAAGATCAAACTCGGAGGCGCTCGCTACCAGCTTCTGTTTCCTACTCACGGTAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACATGGATTGATATAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGCAGTGATCTTCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAGTATAGTCCATCTCGATCGTTATCAAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAATGGTTCGAATTGTAAAAGTTCCCAGCAGCAGTGTCCGTACATGGTCAGTTACTTGTCAGATAATACGTCGAGTTCTGGACTGTTAGTTGAGGACATACTGCATCTTCAGTCTGGTGGCGGTTTATCAAACTCGTCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTACTTGGATGGAGTTGCTCCCGATGGTCTATTAGGTTTGGGACCTGGGGAAAGTTCAGTTCCAAGTTTTCTTGCTAAGTCAGGATTAATCCACAATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGATCAGGGACCAACCATCCAACAGTCTACTCCATTCTTGCCTTTGGATGGATTATATTCAACGTACATTGTTGGAGTGGAGTCATCTTGTATTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGCACAGGTTGATAGTGGAACGTCTTTTACATTTCTTCCTGGCCATGCTTATGGAGTAATAGCGGAGGAGTTTGATCAACAAGTAAATGGTACAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGCTATGTACCCAGTTCACAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCATGTTCCAGCAGAATAACAGTTTTGTGGTCTATAATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACAGAAGGAGATATGGGAACAATTGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGAAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTGTAGGTAAGAGGATGCCCCTTTCTCCAAACGAGACTTCGCCAAACCCATTGCCTTCAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAGTCTTCAGCAGCGTTATCTCGGATGATTTCATCTTGCCGGGTATATTGGCACTGCTATTTGTTTCTTCTATTTCAGCTTGTGTCTGCCACTTACTACTTAGAGCTTCCCATTCTTGTTCCTATATATGTCTAG 1608 0.4571 MWWRLLLLFLSLLELTARAMPLPITFSARLVHRFADEIKPVQIPTADWPDRRSMRYFQMLLADDILRRKIKLGGARYQLLFPTHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHQLCDNGSNCKSSQQQCPYMVSYLSDNTSSSGLLVEDILHLQSGGGLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHNSFSLCFNEDDSGRMFFGDQGPTIQQSTPFLPLDGLYSTYIVGVESSCIGNSCLKMTSFKAQVDSGTSFTFLPGHAYGVIAEEFDQQVNGTRSSFEGSPWEYCYVPSSQELPKVPSLTLMFQQNNSFVVYNPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRENKKLAWSRSNCQDLSVGKRMPLSPNETSPNPLPSDEQQRTNGHAVAPAVAGRAPHKSSAALSRMISSCRVYWHCYLFLLFQLVSATYYLELPILVPIYV* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00179 535 FunFam Aspartyl protease family protein 1 284 449 - -
Lapu6g00179 535 Pfam Xylanase inhibitor N-terminal 100 281 IPR032861 -
Lapu6g00179 535 Gene3D Acid Proteases 282 449 IPR021109 -
Lapu6g00179 535 FunFam Aspartyl protease family protein 1 85 281 - -
Lapu6g00179 535 ProSiteProfiles Peptidase family A1 domain profile. 99 443 IPR033121 -
Lapu6g00179 535 Pfam Xylanase inhibitor C-terminal 321 443 IPR032799 -
Lapu6g00179 535 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Lapu6g00179 535 PRINTS Pepsin (A1) aspartic protease family signature 419 434 IPR001461 GO:0004190|GO:0006508
Lapu6g00179 535 PRINTS Pepsin (A1) aspartic protease family signature 323 334 IPR001461 GO:0004190|GO:0006508
Lapu6g00179 535 Gene3D Acid Proteases 84 281 IPR021109 -
Lapu6g00179 535 SUPERFAMILY Acid proteases 93 448 IPR021109 -
Lapu6g00179 535 MobiDBLite consensus disorder prediction 452 477 - -
Lapu6g00179 535 MobiDBLite consensus disorder prediction 452 487 - -
Lapu6g00179 535 PANTHER ASPARTYL PROTEASES 21 440 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00179 Lapu-Chr6 1485613 1490190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00179 92 450 Miscellaneous Gene Families AT1G44130 28.721 2.38e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00179 - - gmx:100817311 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00179 6 1485613 1490190 Lapu6g00179 6 1485613 1490190 ECH