Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00166 ATGAGTGATTCACCGGACAGGAAACCTCGTTGTGGCTTAATGACAGCAATATTCGGGCCACGCAAAACAGTGTCTGCGGGTTCTTCTCCCATCAACAACAATTTTGAAAATTTACCAAGCAATCAAGATTCAAAATGGGAATGTGTTGGTTCTAAGGATGTTGTTTCAGTTAGAGAAATTTCAAATAATGATGTTACAAACTCTTCATCTCATTCAATCTCCACTCCTCATAAGCCAACTCATGTTGTAAGCCATGGGAAACCACAAAATCCCAATGAAATGAAAATGAGAAAATGCACCTCAACTACTCAAGGTAATGTAAATAAAGGAAAAAGGGTTCCAAAAGAAGTTATTGGTATCTCTGATGAACTTGAAAGCATGATCAATGATCACCTGATATCCAAAGGAGGTGATAGATTTGCTCAAGCTTCTTCTAATTATGGGATGTCGTATGGTAATTTAGGTAACCTTAGAGGAGGGGGATGTGGATTAGATCATAATGATTATAATGAAATGAATTGTGATGCTAATGTTTCTAGTGGAGGACACAAGAATCAAACTGTAGGACGTGAATATTGTAATAGTAATTGTAATAAAGAAACCAAACCAAGCAACAAGGGATCAGAATCACTATGTAGAGCTTTGTCTACCAGAATGGATCCAGAGCAATTGAAAATAATGGGCAATGAAGATTACAAGAATGGAAGGTTTTGTGAGGCTTTAGCATTGTATGATGCTGCCATCGAAATTGACCCCAATAAGGCTTCTTACAGAAGTAACAAAAGTGCTGCACTAATTGCTCTTGGTAGGCTTTTAGAGGCTGTTTTTGAATGTAGGGAAGCCATTCGAATTGAGTCTCGTTACCAAAGAGCACATAATCGATTGGGAAAATTGCACTTTAGATTGGGAGAAACAGATAAGGCGTTGTATCATTATAAACAAGCTGGAGCAGAAGCTAATCCGGATGAGATTGCTCAAGTAAAGAATCTCCAAGTATATCTGAACAAATGTACCAAGACTCATAAGTTGGGTGATTGGAACACACTTATAACTGAAACCAACATTATTCTATCATCCGGTGCAGATTCTGCTCCACAAATATACACCTTACAAGCCGAAGCGCTACTAAAACTTCACAAACACGAAGATGCAGAGAAGGTAATGTCAAAATGCCCAAAGTTTGATGTTGACGAGTGTACCAAGTTCTTTGGACCAATTGGTAATGCAAATTTATTGGTGAAGTGTGCTCAAGTTGATTTAGTCAATGGCAGGTTTGAAAAAGCTTTGGAGGCAGTAGAAAAAGCAATTAGGCTAGATCCTAATAGTAGGGAGGCAAATAAGGTGGTACGAAAAACTCGAGCTGTCACAAATGCTCGTGCAAGAGGAAATGAGCTTTTCAAGGTAGCAAATTTTAACGAGGCTTGCATTGCCTATGAGAAAGGCCTTGAACATGATCCATATAACTCAGTCCTACTATGCAATAGAGCTGCTTGTAGATCAAAATTGGGCCAATTTGATAAAGCCATAGATGATTGCACCCTTGCCCTTAACTTGCGTCCATCCTACAGGAAGGCTAGGTTGAGAAGGGCATATTGTAATGCCAAGTTGAAAAGATTGGAAGCTTCAATACAAGATTACAAAATCTTGTTAAAAGAGACACCAGAAGATGAAGAAGTAAAACGAACATTGTTGGAAGCTCAGACAGAAATTGCGAAACAAGATCAGGAAAGAACTCAAACACATTAA 1746 0.3849 MSDSPDRKPRCGLMTAIFGPRKTVSAGSSPINNNFENLPSNQDSKWECVGSKDVVSVREISNNDVTNSSSHSISTPHKPTHVVSHGKPQNPNEMKMRKCTSTTQGNVNKGKRVPKEVIGISDELESMINDHLISKGGDRFAQASSNYGMSYGNLGNLRGGGCGLDHNDYNEMNCDANVSSGGHKNQTVGREYCNSNCNKETKPSNKGSESLCRALSTRMDPEQLKIMGNEDYKNGRFCEALALYDAAIEIDPNKASYRSNKSAALIALGRLLEAVFECREAIRIESRYQRAHNRLGKLHFRLGETDKALYHYKQAGAEANPDEIAQVKNLQVYLNKCTKTHKLGDWNTLITETNIILSSGADSAPQIYTLQAEALLKLHKHEDAEKVMSKCPKFDVDECTKFFGPIGNANLLVKCAQVDLVNGRFEKALEAVEKAIRLDPNSREANKVVRKTRAVTNARARGNELFKVANFNEACIAYEKGLEHDPYNSVLLCNRAACRSKLGQFDKAIDDCTLALNLRPSYRKARLRRAYCNAKLKRLEASIQDYKILLKETPEDEEVKRTLLEAQTEIAKQDQERTQTH* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00166 581 Pfam Tetratricopeptide repeat 491 522 IPR001440 GO:0005515
Lapu6g00166 581 SMART tpr_5 409 442 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 489 522 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 221 254 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 365 398 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 523 556 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 255 288 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 455 488 IPR019734 GO:0005515
Lapu6g00166 581 SMART tpr_5 289 323 IPR019734 GO:0005515
Lapu6g00166 581 Pfam Tetratricopeptide repeat 423 441 IPR019734 GO:0005515
Lapu6g00166 581 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Lapu6g00166 581 SUPERFAMILY TPR-like 459 575 IPR011990 GO:0005515
Lapu6g00166 581 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 579 IPR044534 -
Lapu6g00166 581 Pfam Tetratricopeptide repeat 291 320 IPR019734 GO:0005515
Lapu6g00166 581 ProSiteProfiles TPR repeat profile. 409 442 IPR019734 GO:0005515
Lapu6g00166 581 MobiDBLite consensus disorder prediction 64 79 - -
Lapu6g00166 581 Gene3D Tetratricopeptide repeat domain 219 576 IPR011990 GO:0005515
Lapu6g00166 581 MobiDBLite consensus disorder prediction 64 96 - -
Lapu6g00166 581 SUPERFAMILY TPR-like 221 445 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00166 Lapu-Chr6 1361158 1363373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00166 303 564 Glycosyltransferase AT3G04240 23.427 4.74e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00166 - - gmx:100811282 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00166 6 1361158 1363373 Lapu6g00166 6 1361158 1363373 ECH