Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00163 ATGTCTTCTCTTCAACTGTTGCAACTAACTCGGCATGGCCAGAGTATTCTGGCTTCAAGGAGGAAAACTTTATTACTTGCATCTGGTATCTTAATTGCTGGCGGAACAGCTGCATATTTGCAATCAAGGTTTAGAGTTAATAAACCTGATTTATTTGGACATTGCAATGGGCACAACAATGATAGAGAAGTCATAGAGGAGGAGGTTGGCGTTAATGTGTCAAAAAATAAACAAAAGAAAGGGTTGAAGTCACTCCAAATCCTTGCTTCAATTCTACTATCTGACATGGGCAAATTAGGTGCAAGGGATCTTCTAGGTTTAGTTGCCATAGCGGTGTTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCCTTGTTTCTTCGGCTAATTTCAGAAAATATTCTTTTGTGTTTCCTTTTGTCAACCATTCATTCTACATCAAAGTATATAACAGGGACTTTGAGTTTACATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCACATGTTGACGGCCGGATAACTAATCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCAGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCAGTTACTGATGGACTTCTATACACTTGGCGTTTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATACTGGCGTATGTACTGGGAGCTGGTGCTGCAATCAGAAACTTCTCTCCTTCATTTGGGAAACTTATGTCTAAAGAGCAGCAATTGGAAGGAGAGTATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGCATAGCATTCTATGGTGGAGAGAGGAAAGAAGAAGCTCATATTCAACAGAAGTTTAAAACCTTGGTTAGGCATGCACATAATGTGCTACACGACCATTGGTGGTTTGGCATGATTCAGGACTTACTGTTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATTTAAGGCCTGACAGCTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTTAGATATCATACCAGTGTCATAATTTCTTTATTTCAGTCTCTAGGAACTCTGTCTATCAGTGCAAGACGGCTCAACCGTCTCAGTGGGTATGCTGATCGCATTTGTGAATTAATGGCTGTATCAAGGGACTTAAGTTTGGTAGATGATAAATCTTCCCTTCAAAGAAAAGCAAGTAGAAATTGCATAAGTGAAGCTAACTACATTGAATTTGATGGTGTCAAGGTTGTGACCCCCACTGGTAATGTCTTGGTGGAGGATCTGACTCTTAGGGTTGAATCCGGGTCAAATCTTTTGATTACAGGTCCAAATGGCAGTGGTAAAAGCTCTCTTTTCCGGGTTCTAGGTGGCCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTTCCCCAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTCTTACTGCAGATCAAGAGGTTAAACCACTCACAGATTGTGGGATGGTGGAGCTGTTAAAAAATGTTGACCTTGAATACCTGTTGGATCGTTACCCTCCTGAAAATGAGGTAAACTGGGGTGAGGAACTTTCATTGGGTGAGCAACAGAGATTGGGCATGGCAAGACTTTTCTATCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTGACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCAATGGGAACATCGTGCATTACCATATCACATCGTCCAGCATTGGTTGCATTTCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTACATTATAGAAGGGAGGGCTCTCCTACTGAAATGGAGATTAATACGATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAGGATCCTGCATTCTCAAATCCAAAGGCACAGTCGTATTTTTCAGAAGTGATATCATCATCTCCATCCATGAATCATACAATTTCACCATCTGTTGTTCCCCAACTCCGTTGTAATACAAGGGTATTTACATTGAGAGTAGCTGCTATGTGCAAAGTATTGGTACCCACTATACTTGATAAACAAGGTGCACAACTGCTTGCTGTTGCTTTTCTTGTTGTTTCAAGAACATGGGTCTCGGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTCATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGCTGCATCCGCTTTCATTGCTCCTTCCATAAGGCACTTGACAGCCAGGCTAGCACTGGGGTGGCGAATCCGTTTGACACAACATCTGTTAGAAAACTACTTGAGAAACAACGCATTCTACAAGGTCTTTCACATGGCAAGCAAAAATATTGACGCAGATCAGAGGATAACTCAAGACTTGGAAAAGTTAACATCAGACTTGTCTGGATTGGTCACTGGATTGGTAAAGCCATCTGTGGATATTTTGTGGTTCACGTGGAGAATGAAGCTGTTAACAGGTCAGAGGGGGGTTGCGATACTCTATGCCTACATGTTACTTGGTCTTGGATTTTTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAGGAGCAACAACTTGAAGGGATATTTAGGTTTATGCATGAAAGGCTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAGCTCGAGAAAAAGCTATGGTTGAATCAAGATTTAGGGAGCTTCTCTCCCACTCCAAATACCTCCTAAAAAAGAAGTGGCTGTTTGGTATACTGGATGATTTTATTACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGACCGAGCTTCAATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCCTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGCGACATTCTTGAACTGAACAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATAGGATTTTTGACCTTGAAGAACTTCTGGATGCAGCACAGTCTGACGGCTCTAACAATGGCAGTATTACACTTCCAATGAGGGATTATCATGCCAAAGATGCTATTTCCTTTTCTAAGGTTGATATTGTAACCCCTTCCCAGAAGATGTTGGCGAGAGAGTTGACATGGGACATTGAGCTTGATAGAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGGAAAAGTTCCATTTTCAGAGTTCTGAGAGGACTTTGGCCAATTGCAAGCGGAAGACTCTCTAGACCATCTGATGATGTGGATCCAGAGGCTGGATCAGGTTGTGGCATCTTTTATGTTCCTCAGCGGCCTTACACTTGCTTGGGAACATTGCGGGATCAAATTATATACCCACTGTCCCGTGAGGAAGCAGAGTTGAGAGCATTGAAGATACACGGAAAAGGTGAGAACCATGACCATAGAAAATTGTTGGACAAACACTTGCAAATTATCCTAGAGAATGTACGGTTGAATTATCTTCTAGAAAGAGACAATAGAGGCTGGGATGCAAATCTAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGGTTAGGAATGGCACGGTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCAACTAGCGTTGATGTCGAGGAACACCTATATGGGCTAGCGAACAAAATGGGAATCACAGTTGTTACTTCCTCGCAACGTCCTGCTTTAATACCATATCATTCCATGGAATTGCGTCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTCAATCAAGCAATGA 4002 0.416 MSSLQLLQLTRHGQSILASRRKTLLLASGILIAGGTAAYLQSRFRVNKPDLFGHCNGHNNDREVIEEEVGVNVSKNKQKKGLKSLQILASILLSDMGKLGARDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGERKEEAHIQQKFKTLVRHAHNVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRICELMAVSRDLSLVDDKSSLQRKASRNCISEANYIEFDGVKVVTPTGNVLVEDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVKPLTDCGMVELLKNVDLEYLLDRYPPENEVNWGEELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYRREGSPTEMEINTMKASETKRQSDAKAVQRAFSMSKKDPAFSNPKAQSYFSEVISSSPSMNHTISPSVVPQLRCNTRVFTLRVAAMCKVLVPTILDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASAFIAPSIRHLTARLALGWRIRLTQHLLENYLRNNAFYKVFHMASKNIDADQRITQDLEKLTSDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGIFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFDLEELLDAAQSDGSNNGSITLPMRDYHAKDAISFSKVDIVTPSQKMLARELTWDIELDRSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSDDVDPEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKIHGKGENHDHRKLLDKHLQIILENVRLNYLLERDNRGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPYHSMELRLIDGEGNWELRSIKQ* 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00163 1333 SUPERFAMILY ABC transporter transmembrane region 117 414 IPR036640 GO:0005524|GO:0016020
Lapu6g00163 1333 Pfam ABC transporter transmembrane region 2 88 356 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00163 1333 Pfam ABC transporter transmembrane region 2 743 1008 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00163 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 648 IPR027417 -
Lapu6g00163 1333 Gene3D ABC transporter type 1, transmembrane domain 96 419 IPR036640 GO:0005524|GO:0016020
Lapu6g00163 1333 CDD ABCD_peroxisomal_ALDP 1096 1326 - -
Lapu6g00163 1333 Gene3D - 430 703 IPR027417 -
Lapu6g00163 1333 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 148 338 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu6g00163 1333 CDD ABCD_peroxisomal_ALDP 444 652 - -
Lapu6g00163 1333 Pfam ABC transporter 1114 1279 IPR003439 GO:0005524
Lapu6g00163 1333 Gene3D - 1088 1325 IPR027417 -
Lapu6g00163 1333 SMART AAA_5 469 648 IPR003593 GO:0016887
Lapu6g00163 1333 SMART AAA_5 1121 1332 IPR003593 GO:0016887
Lapu6g00163 1333 Pfam ABC transporter 461 606 IPR003439 GO:0005524
Lapu6g00163 1333 SUPERFAMILY ABC transporter transmembrane region 758 1011 IPR036640 GO:0005524|GO:0016020
Lapu6g00163 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1096 1331 IPR003439 GO:0005524
Lapu6g00163 1333 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 444 675 IPR003439 GO:0005524
Lapu6g00163 1333 ProSitePatterns ABC transporters family signature. 1251 1265 IPR017871 GO:0005524|GO:0016887
Lapu6g00163 1333 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 704 1329 - -
Lapu6g00163 1333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1088 1322 IPR027417 -
Lapu6g00163 1333 ProSitePatterns ABC transporters family signature. 578 592 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00163 Lapu-Chr6 1311815 1331649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00163 1 1333 Acyl Lipid Metabolism Gene Families AT4G39850 76.957 0.0 2112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00163 K25819 - gmx:100813765 2443.69