Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00045 ATGTCGGAGATGGCGAGCCCAGATCCCGAGGGAGTGGACGGAGTGCGCATGACGTGGAACGTGTGGCCCCGCACCAAGGTTGAATCGAGCAAGTGCGTCATCCCTCTGGCAGCCACGGTGGCCCTCATCCGCCCCCACCCTGACATCCCCCGCCTCCAGTACGCCCCTCTCCGCTGCAAGACCTGCTCCTCCGCCCTCAACCCCTGCTCCAGGGTCGACTTCACCGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGCGCAACCACTTCCCCCCTCACTACAGCGCCATCTCCGAAACAAACTTCCCCGGCGAACTCTACCCACAATACACCACCGTCGAGTACATCCTCCCCCTATCCAATTCCGTCAACCCTTCCCCCGTTTTCCTCTTCCTCCTCGATACCTGTCTCATCGAGGAGGAGATCCAGTTCCTCAAATCCGCGCTTCGTCGCGCCATTGGCCTTCTTCCCGATAACGCCCTCGTCGGCTTTGTCTCCTTCGGCACGCAGGTCCAGGTTTATGAATTGGGCTTCTCCGACATGTCCAAGGTTTATGTCTTCCGCGGCTCCAAGGAGATTCACGCCGATCAGGTTCTCGATCAGCTAGGCCTTTCTCCTTCCGGGAGAAGACCTAATAAGACCTCCGCTGGTATCGCCGGCGCCGGTGTTGGGGGATTCCCCGGTTCCGGCATCACACGCTTTTTGTTGCCTGCTTCTGAGTGTGAATATACTCTCAATGCGCTGTTAGATGAATTGCAGACGGATCAGTGGCCGGTTCCGCCTGGGCGCCGCCCTGCGCGCTGCACCGGGGTTGCTTTGGGTGTTGCTGCAGGGTTGCTGAGTGCTTGTAATCCTGGGACTGGCGCTAGAATCATAGCTTTGGTTGGGGGGCCGTGCACGGAAGGACCTGGGGCGATTGTGTCAAAAGATCTGTCTGACCCAGTGCGTTCTCATAAAGATCTTGATAAAGATGCGGCACCATACTTCAAGAAAGCAGTCAAGTTTTATGAGGGTCTTGCTAAACAGCTGGTTAGCCAGGGTCACGTTTTAGATATTTTTGCATCAGCACTTGATCAGGTCGGAGTTGCGGAAATTAAAGTTGCAGTTGAAAGAACTGGTGGTCTTGTTGTCCTGGCTGAAAGTTTTGGTCATTCAGTCTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGACGGGGAACAATCTCTTGGTCTTTGTTTCAATGGAACCCTGGAGATAAATTGCTCCAAGGAAATCAAAATTCAGGGAGTTATTGGTCCTTGCACTTCCTTGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGTTATAGGAGAAGGAAACACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACGTGCGTGACTGTGATGTTTGATCTTTCATCAAGTGATCGAGCAAACACCCCAGGTGCTGTCAACCCACAATTGTACCTACAGTTCCTTACAAGCTACCAGGACCCAAGTGGTCAATCGGTTCTTCGTGTCACAACAGTAACTAGAAGATGGGTAGATAGTACTGTTAGCTCTGAGGAATTGGTTCAAGGATTTGACCAAGAAACTGCAGCAGTTGTAATGGCTAGATTTGCTTCTCTAAAAATGGAGAGTGAGGAAACATTTGATGCTACACGGTGGTTAGATCGGTTTCTCATTCGCCTTTGTTCTAAGTTTGGTGACTACCGCAAGGATGATCCCTCATCATTTACATTAAACCCATCATTTTCACTTTTCCCTCAGTTTATGTTCAATCTGCGACGCTCACAGTTTGTACAGGTCTTTAACAACAGTCCAGACGAGACTGCATATTTCCGCATGTTGTTAAACAGGGAAAATATTAGTAATGCTGCTGTTATGATTCAGCCGTCACTGATAGCATATTCATTTAATTCACTGCCTGCACCAGCATTGTTAGATGTGGCTTCCATTGCTGCAGACCGGATTTTGTTGCTAGATTCATATTTTAGTGTGGTTATTTTTCATGGGATGACAATAGCTCAATGGCGCAACTTGGGATACCAGAATCAGCCAGAACACCAGGCATTTGCACAGCTATTACGAGCTCCACATGATGATTCCCAAATGATAATTAGAGAACGGTTCCCAGTTCCTAGATTGGTAGTGTGTGATCAACACGGTTCCCAGGCTAGATTTTTATTAGCAAAACTGAATCCCTCAGCAACGTATAATAATGCGCATGAGATGGCTGCTGGTTCTGATGTAATATTTACCGATGATGTGAGCCTTCAAGTTTTCTTTGAGCATCTGCAGAGGTTGGCTGTCCAATCTTGA 2307 0.4933 MSEMASPDPEGVDGVRMTWNVWPRTKVESSKCVIPLAATVALIRPHPDIPRLQYAPLRCKTCSSALNPCSRVDFTAKIWICPFCYQRNHFPPHYSAISETNFPGELYPQYTTVEYILPLSNSVNPSPVFLFLLDTCLIEEEIQFLKSALRRAIGLLPDNALVGFVSFGTQVQVYELGFSDMSKVYVFRGSKEIHADQVLDQLGLSPSGRRPNKTSAGIAGAGVGGFPGSGITRFLLPASECEYTLNALLDELQTDQWPVPPGRRPARCTGVALGVAAGLLSACNPGTGARIIALVGGPCTEGPGAIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDIFASALDQVGVAEIKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGVIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCVTVMFDLSSSDRANTPGAVNPQLYLQFLTSYQDPSGQSVLRVTTVTRRWVDSTVSSEELVQGFDQETAAVVMARFASLKMESEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENISNAAVMIQPSLIAYSFNSLPAPALLDVASIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLRAPHDDSQMIIRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQRLAVQS* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00045 768 FunFam Protein transport protein SEC23 53 112 - -
Lapu6g00045 768 FunFam Protein transport protein SEC23 126 405 - -
Lapu6g00045 768 Pfam Sec23/Sec24 trunk domain 126 395 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lapu6g00045 768 CDD Sec23_C 616 736 IPR037550 GO:0030127|GO:0090114
Lapu6g00045 768 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 627 767 IPR036180 -
Lapu6g00045 768 FunFam Protein transport protein SEC23 521 638 - -
Lapu6g00045 768 Gene3D - 53 112 - -
Lapu6g00045 768 SUPERFAMILY Zn-finger domain of Sec23/24 47 118 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lapu6g00045 768 Pfam Sec23/Sec24 helical domain 524 620 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lapu6g00045 768 Gene3D Sec23/Sec24 helical domain 521 765 - -
Lapu6g00045 768 Pfam Gelsolin repeat 636 724 IPR007123 -
Lapu6g00045 768 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lapu6g00045 768 Gene3D - 10 507 - -
Lapu6g00045 768 SUPERFAMILY vWA-like 127 396 IPR036465 -
Lapu6g00045 768 Gene3D von Willebrand factor, type A domain 126 404 IPR036465 -
Lapu6g00045 768 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 8 767 IPR037364 -
Lapu6g00045 768 Gene3D Severin 626 730 IPR029006 -
Lapu6g00045 768 FunFam Protein transport protein SEC23 626 730 - -
Lapu6g00045 768 Pfam Sec23/Sec24 beta-sandwich domain 406 510 IPR012990 -
Lapu6g00045 768 SUPERFAMILY Helical domain of Sec23/24 524 626 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lapu6g00045 768 SUPERFAMILY beta-sandwich domain of Sec23/24 8 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00045 Lapu-Chr6 400605 407067 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00045 K14006 - gmx:100789860 1459.51