Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00030 ATGAGTATTGGGAGCCTGGGACGTAATGGAGATGATGCCAAAGTTGAAAAGATACACGTGCGGAATTGCACCTTGGAGGGAACTTCGAATGGAGTGAGAATGAAGACATGGAGGGGAGGATATGGTTATGCGAGGAATATCATATTTAAAGATATTAAAGTTGTAGGAGTGGAGCACCCTGTGATTATACAGCAAGATTATTTGGGAGAAATGGGAGAAAGTGAGAGGGTAAGTGCAGTGAAAATAAGTGATGTTACTTACAGGAACGTGAAGGGAACAAGTAGCAGCGACCGTGCAGTGGATCTGAATTGTGATCCCAATGCAGGCTGCACCGACATTGTAATGGACCATATTTCCATAACCAAAGAAGACGGCGGTGAAGCACAGGCATCATGCAAAGCTGCACAGGGGACCTGCTTTCTCTGCAATCCAATCGTCCCTTGTCTTTCGCATCTTATCTAG 462 0.4524 MSIGSLGRNGDDAKVEKIHVRNCTLEGTSNGVRMKTWRGGYGYARNIIFKDIKVVGVEHPVIIQQDYLGEMGESERVSAVKISDVTYRNVKGTSSSDRAVDLNCDPNAGCTDIVMDHISITKEDGGEAQASCKAAQGTCFLCNPIVPCLSHLI* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00030 153 SUPERFAMILY Pectin lyase-like 1 149 IPR011050 -
Lapu6g00030 153 Pfam Glycosyl hydrolases family 28 1 136 IPR000743 GO:0004650|GO:0005975
Lapu6g00030 153 PANTHER - 1 137 - -
Lapu6g00030 153 Gene3D - 1 145 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00030 Lapu-Chr6 286842 287493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00030 1 137 Glycoside Hydrolase AT4G35670 45.255 1.53e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00030 K01184 - gmx:732657 159.073