Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00014 ATGCTCCGCCGTTTTGAACCCCTACGCCCGCCTCGACTACCAGTCCCGCATCTGGCACTGCCCCTTCTGCTCCCTCCGCAACCCCTTTCCCCGCCCCATCGCCGACACCAACCTCCCCGCCGAGCTCTTCCCCACCTACAGCACCGTCGAGTACTCTCCTCCTCTCCCCTCCTCCTCTCCCCCGCCCCCTCCCCCGCCTTCGTCTTTCTCCTCGATCTCTCCTCCCCCCCCGACCAACTCCTCTCCCTCAAGAACCACCTCCTCCTCCTCCTCCACCACTTCCCCGACCACGCCCTCGTCGCTCTCCTCACCTTCGACTCCATGGTCTATCTCCACCACCTCGCCTCTTCCCCCTGTTCCTCCCTCCACCTCTTTCACGGCAACCGCCATCTCTCCTCCAATCAGATCCGCCAGCTCCTCAACATTGGCCGCCCCCACCAGCTGCTTCATGGACACACCCCCAAACAGGATTTTCTGTTGCCATTTTCCGAATGTGAATTCTCCATCACTTCTGCAATTGAAGACATCCATTCCACATTCGACTTCACCTCCGCTACTCGCCCTCCAAGGTGCACCGGGGCTGCAATTTCCGTCGCCCTCGGACTCCTGGAGTCTTGTCTTGTCACCACAGGCTCCAGGATCATGCTCTTCACCTCCGGACCTGCCACTCTCGGACCTGGCATTGTTGTCGATTCTGATCTCCGCCATCCAATCAGAACCCACCATCACATCTTCAACTCCCAAGCCAAACACCACGTCAACTCTTGCACCTTCTATAACCAACTCTCCAAGCGGCTATCTGATGCGTCTGTTGTTCTTGATCTCTTTGCCTGTTCGCTCGATCAAGTTGGGGCCGCCGAGCTTCGACAGCCTGTTGAGCAATCTGGTGGACTCATGATTCTCTGCGAATCTTTCGAATCCGATCAGTTCAAGAAATGTCTACAGCATATGTTCAAGTCTGACGACCAGGGGCATTTGAAGATGAACTTTGATGCCACTATTGAGATAGTTACCACCAAAGATGTCAAAATCTGTGGAGCACTTGGCCCTTGCGTCTCTCTTCACAGAAAGAACAGTTTGGTGAGTGAGTCTGAGGTTGGACAAGGTGGTACCTCTTTGTGGAAGTTAAACACACTCACCCACAAAACTTGCATTGCTTTTTTCTTCCAAGTGAATCAGCAGCAGAAAATTCAACCCGGCTCCGCATTTTTGATTCAGTTTATCACGAGGTACAGGCAGGGGAACATGGGATGCCGGAAAAGAGTGACCACTGCTGCAAGACGATGGGTTGCAAGCCATTCTGCCGATATTGCCGCTGGGTTTGATCAAGAAGCCGCCGCTGCAGTTATGGCAAGACTTGCCATTCTCCGTGCACAGTCGTGCCATCCCCGTGATGTCATTAGATGGCTGGATGACGCGCTCATACGTTTTACTTCCAAGTTTGGGGACTACGTTCCTGAAGATCCGTCTTCCTTTCGCCTATCCTCCAACTTTTCCCTCTATCCCCAGTTTATGTTTCACTTGAGGCGATCTCAATTCATTGATGTCTGTAACACTACTCCCGATGAAACTGCATTTTTCCGGCTCATGCTGAACCGCGAGGGAGTAGTAGGATCGCTTATAATGATTCAACCTACGCTTTTCCAGTATTCGTTTGATGGCCCTCCTGTTCCAGTACTGCTAGATATTCGTTCTGTTTCTCCGGATTTTATCTTGCTCTTTGATTCTTTCTTCTATGTAGTGATTCATCACGGGTCCAAGATCGCTCAGTGGAGGAAGCTTGGTTATGATAAGGACCCCAATCATGAGAACTTCAGAAAGCTGCTGGAGGCCCCAGAACTGGATGCAGAGCAATTGGTGGCGGACAGGGTTCCGGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGGTTTCTTCTCGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACCTACACAGATGGATCAGATATTATATTTACTGATGACATGAGCTTGGAGGTTTTTCTAGATCAGTTGCAGGTACTGGCTGTGCAAAGCTAG 2055 0.5158 MLRRFEPLRPPRLPVPHLALPLLLPPQPLSPPHRRHQPPRRALPHLQHRRVLSSSPLLLSPAPSPAFVFLLDLSSPPDQLLSLKNHLLLLLHHFPDHALVALLTFDSMVYLHHLASSPCSSLHLFHGNRHLSSNQIRQLLNIGRPHQLLHGHTPKQDFLLPFSECEFSITSAIEDIHSTFDFTSATRPPRCTGAAISVALGLLESCLVTTGSRIMLFTSGPATLGPGIVVDSDLRHPIRTHHHIFNSQAKHHVNSCTFYNQLSKRLSDASVVLDLFACSLDQVGAAELRQPVEQSGGLMILCESFESDQFKKCLQHMFKSDDQGHLKMNFDATIEIVTTKDVKICGALGPCVSLHRKNSLVSESEVGQGGTSLWKLNTLTHKTCIAFFFQVNQQQKIQPGSAFLIQFITRYRQGNMGCRKRVTTAARRWVASHSADIAAGFDQEAAAAVMARLAILRAQSCHPRDVIRWLDDALIRFTSKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSVSPDFILLFDSFFYVVIHHGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVADRVPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDDMSLEVFLDQLQVLAVQS* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00014 684 Gene3D Severin 544 648 IPR029006 -
Lapu6g00014 684 FunFam Protein transport protein SEC23 544 648 - -
Lapu6g00014 684 SUPERFAMILY beta-sandwich domain of Sec23/24 337 441 - -
Lapu6g00014 684 SUPERFAMILY Helical domain of Sec23/24 442 544 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lapu6g00014 684 FunFam Protein transport protein SEC23 327 427 - -
Lapu6g00014 684 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 545 683 IPR036180 -
Lapu6g00014 684 SUPERFAMILY vWA-like 65 319 IPR036465 -
Lapu6g00014 684 Pfam Sec23/Sec24 trunk domain 64 317 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lapu6g00014 684 CDD Sec23_C 534 654 IPR037550 GO:0030127|GO:0090114
Lapu6g00014 684 Pfam Sec23/Sec24 beta-sandwich domain 330 430 IPR012990 -
Lapu6g00014 684 FunFam Protein transport protein SEC23 64 328 - -
Lapu6g00014 684 Gene3D Sec23/Sec24 helical domain 439 681 - -
Lapu6g00014 684 Gene3D von Willebrand factor, type A domain 64 327 IPR036465 -
Lapu6g00014 684 Pfam Sec23/Sec24 helical domain 442 538 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lapu6g00014 684 Pfam Gelsolin repeat 556 642 IPR007123 -
Lapu6g00014 684 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 63 683 IPR037364 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00014 Lapu-Chr6 191791 194269 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00014 K14006 - gmx:100784000 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g00014 6 191791 194269 Lapu6g00014 6 191791 194269 ECH