Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00011 ATGAGTGCTGCTGAGATTGATTCAACTTCTGCTCCTGAACCTCACAAAATGTCTGGAGCTTCATCTGCAACAGCTACTAGTGGCCAAAAGCTCTCTGTATTTGCTGCCAAATCAGGGTTTGTCATCCCTAAAAACAAATTGTCGGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAACATGGGGTCACTGGAGCCATCAATGAAGAAATTTCAAAACAAATTGAGAGGAAATCAAAATGGGGACCTGATCTTACACAAGATGCAACTGTCAGGAGGGGAAAGGCTTTAGCTTTGCAGATTCGAGTAGATCAAATCACAAAGCAATTGGAATCAGAAAAACTCGAAGTTGGGGACACTCAGAGCTTGCTATTGGGAGCTGAGAATTCGGATCAAGGCAAATCCGACTCTCAAATTAACAGCAAGAAGTCAGAAATGCTCGAACTTGAAAAGAGGGAAGCCATAGGTGAAATACTAAAATTAGATCCCAGTTACAAACCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAGCATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGACCTGAAGGTGATAATCAGAAACAACTAGAAAAGGAAACTGCTGCCAAGATAAAAATTCATGGAACCAAAGCAGACACAGGAGAGAAAGGTGAAATTAAACCTGGAACTGATATCCAGTGCAGTTACAAAGAGATGTATGTTAACATATCAGCTGATAGTTTTGAAAAAGTGGATGCAGCAATGTCAATCATTGAACTGCTAATTACCTCTGTAACTGGGAATTTAGCTGCTGGCTCTACACCCTCTATACCAGTTTCTAGGGACAACACTGATATTCTATGTCAAAGCCAAGAAGGTCACCCTTCTCATGCAGATTCTGTTTCTCTGGAAAACCAGGCTGTTTTGCAACCAGTAGCTGTTACTCAAATGCACGAAGATAACTTCCAGTACTCTACACCATGGTTTTCAGTGGTTCCATCTAATACCCCCATATTTGTTTCAACTGGCTCTGTAGCCCCCCAAAACCCATTAGGTCTTGCTACAACTCCCCATTTTCCATCACAAACCTCAAACACGGTTCCTACTTTTGGCACTCAACCTGGATTTCAACCAATTATTCCAAATCAACATGTTTCCGTGCAAGCACCACCACCAAGACAGATTTTACACTATCCACATTTGACTCAGGTGAGTCCTTTGGGTCACGCTGGGTCCCCAAGAAATGCTTCTATAATATCTGTACAAAATCTGTCAATTCCAACAAATGCTTCACATTCATTTCCTGTTACTTTAAGCCAACCAACGCCAATAGGACAACTGCAGACATCAGTGTCTTCATTGCATCTACCTGTATCTGGTGTATCACCATTGCCAATACCTAACCAGCCTATCACCCATCTCGGGGTCCCTTCTGGCCAGAATGAAGCGCATGTCGCTGTTAAAACATCTATTGGCCCCAGCAATATGGGGTCAATGGCTCCACCTGGAAGACCTGCTTCTCTACATCAACAACCGGATGTTGCATTTATGCCACCACAGTCAAATATGTCAATGATGCCACGATCTGCCTCCTTTCCTCCACATCAAGTAGGAATATCCCCTGGACCACTATCTTCTTTTAGACCTATGTCTGTACCAATACCTGCACCTAAACATTCATCTGTAAACCATTTATCAGGACCTGTTTCATTTCCTTCGTCTGGAATATCCCCTTCTTTTCCATTGCCTCAGCAAGCAGGAATACCTAGTTCTGCTTCTGCAATTGCTCCATATCACACCCATGTAAAACCATCTGTCTTGGTGCCAGCAAAATCTGGAAATTTTACTTTTCAATCACATCCCCGCAATGCAGACTACAGTCAAGTGGTTTCTGGACCAAACAGTCAAGCAGGTGCTACACAAGAGCCACCTTCTGGTTCTCGGCCTTCGCCATTTGGGTTCTTGCCTGATCAGCCTCTTCAAATCTTTCCAAGGACACAATTCCCTGCTCAAGTGGATCAAAACATTTCCTTCGGGGGAAGATCAGGTTCCATCTCGAACTCAATTCCACCACCCAGACATACTGCATTTCCATATGGTGGTCAACCTGCACCTAGATCTCCAGTCCCACAAATGGGTATGAAGAACTTCATTTCTGCTCCGCAAAGGCCAAACTTGGCCGGTGCTGTTGCCCAAAGAGGCATGCCAATCCGACAAAGCTATCCTGTTCAGATGGCACGGCCAGATATCACAATGCCCCTGAATCACAAGTTTGTGAACAATACCCTCATGGCTTCTGGTAAGCTACCATATTCTGCGGACCAAATTTATGACCCCTTTTCACCCACTTCTGCACCTCCACAACAGAAAGATTTAGGCAAAGACAGAGAAGAGTGTGCAGACAAACTAATGGGGCTGGCTAGCTGCGTTCCTTACGTGGGTGGTGAGGCCAAAACCCCAACCATAGACTGCTGCAGTGGCCTCAAAGTGGTCCTCGACAAGAGCAAGAAATGCATCTGCATCCTCATCAAAGATCGTGATGACCCCAATCTTGGCATCAAGATCAATGCCACTCTCGCTATTCAACTACCCTCTGCTTGCCACGCACCAGCTAATATATCTCACTGTGTAGATCTTTTGCATTTAGCACCTAACTCTCCTGATGCTAAGGTGTTCGAGGGTTTCCAAAAATCCGCCAAAACAAACAGTTCCACCCCAGTTTCCAGTGCTGCAGGTGGTGCTGAGAAAGGATCAAGGTCTAGCTCAGGTGGTCAGGAAAAGAATGGTGCGTCCACAAAGAGGTGGCCAGTGGCACTTTCCTCTATCTTACTACTTCTCTTCCATCTTGTTTGA 2865 0.4471 MSAAEIDSTSAPEPHKMSGASSATATSGQKLSVFAAKSGFVIPKNKLSGSLVPIFRGAKKHGVTGAINEEISKQIERKSKWGPDLTQDATVRRGKALALQIRVDQITKQLESEKLEVGDTQSLLLGAENSDQGKSDSQINSKKSEMLELEKREAIGEILKLDPSYKPPRGFKPLLKEASIPLPVQEYPGYNFVGLIYGPEGDNQKQLEKETAAKIKIHGTKADTGEKGEIKPGTDIQCSYKEMYVNISADSFEKVDAAMSIIELLITSVTGNLAAGSTPSIPVSRDNTDILCQSQEGHPSHADSVSLENQAVLQPVAVTQMHEDNFQYSTPWFSVVPSNTPIFVSTGSVAPQNPLGLATTPHFPSQTSNTVPTFGTQPGFQPIIPNQHVSVQAPPPRQILHYPHLTQVSPLGHAGSPRNASIISVQNLSIPTNASHSFPVTLSQPTPIGQLQTSVSSLHLPVSGVSPLPIPNQPITHLGVPSGQNEAHVAVKTSIGPSNMGSMAPPGRPASLHQQPDVAFMPPQSNMSMMPRSASFPPHQVGISPGPLSSFRPMSVPIPAPKHSSVNHLSGPVSFPSSGISPSFPLPQQAGIPSSASAIAPYHTHVKPSVLVPAKSGNFTFQSHPRNADYSQVVSGPNSQAGATQEPPSGSRPSPFGFLPDQPLQIFPRTQFPAQVDQNISFGGRSGSISNSIPPPRHTAFPYGGQPAPRSPVPQMGMKNFISAPQRPNLAGAVAQRGMPIRQSYPVQMARPDITMPLNHKFVNNTLMASGKLPYSADQIYDPFSPTSAPPQQKDLGKDREECADKLMGLASCVPYVGGEAKTPTIDCCSGLKVVLDKSKKCICILIKDRDDPNLGIKINATLAIQLPSACHAPANISHCVDLLHLAPNSPDAKVFEGFQKSAKTNSSTPVSSAAGGAEKGSRSSSGGQEKNGASTKRWPVALSSILLLLFHLV* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00011 954 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 800 880 - -
Lapu6g00011 954 Pfam Probable lipid transfer 798 880 IPR016140 -
Lapu6g00011 954 MobiDBLite consensus disorder prediction 904 934 - -
Lapu6g00011 954 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 272 IPR036612 GO:0003723
Lapu6g00011 954 ProSiteProfiles Type-1 KH domain profile. 191 262 - -
Lapu6g00011 954 Gene3D - 800 878 IPR036312 -
Lapu6g00011 954 MobiDBLite consensus disorder prediction 1 26 - -
Lapu6g00011 954 Gene3D K Homology domain, type 1 171 296 IPR036612 GO:0003723
Lapu6g00011 954 MobiDBLite consensus disorder prediction 622 663 - -
Lapu6g00011 954 CDD AAI_LTSS 810 872 - -
Lapu6g00011 954 PANTHER RNA-BINDING PROTEIN RELATED 28 643 IPR045071 -
Lapu6g00011 954 SMART kh_6 174 267 IPR004087 GO:0003676
Lapu6g00011 954 MobiDBLite consensus disorder prediction 622 651 - -
Lapu6g00011 954 SMART aai_6 803 880 IPR016140 -
Lapu6g00011 954 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 802 881 IPR036312 -
Lapu6g00011 954 MobiDBLite consensus disorder prediction 904 933 - -
Lapu6g00011 954 FunFam Splicing factor-like protein 1 isoform A 176 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00011 Lapu-Chr6 162624 170677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00011 795 932 Acyl Lipid Metabolism Gene Families AT1G55260 52.143 5.16e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00011 K13095 - gmx:100777227 1199.88