Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00009 ATGTGCACGGTGTCAGGTTCTATCCTTCTGCTTCTGTGCTGTCCTTCTTCTTCCTCTTCTTCGATATCATTCCTTTGTTGTTATTCCAAAATCAAAAGCAAAAAGAGAGTTGGCAATGGCATAAACCATTTAAGTGTGGCCACCGCCACTTGTGCTATGGCCAAAGATGTGTGGAGCCGAACATGTGGATCTGCATCTTCCTCTCCCATTCCCGGGGAACGTGGCAGTAGAAGGCAACAACAAGGTACGTACTTGGACCGCAGCGTGGACATGGAAGAGCTATTAGCGGCAATTGGGGAGACCCAGAACGAGAGTGAACTGTATGCGGTGATGTCCCCCTACAGCGGGAGGCAGCTGTCTATGCGCTTCATGGTTTCCCTTCTCTCCCGCGAGCCCGATTGGCAACGCACCCTTGCCCTTCTCGATTGGATAAACGAAAAGGCCCTCTATTCTCCCTCCCTCTTCGCCTACAACGTCGTCCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCCCACGGCCTGTTCGACGAAATGCGCCACAAGGGCCTTTCCCCCGATAGGTACACCTACTCCACCCTCATCACTTCTTTTGCCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTTCCGGCGACCTTGTCCTCTACAGTAATTTGATCGACCTTGCCCGCAAGTTGTGCGATTACTCCAAGGCCATTTCCATCTTCACCAGATTGAAAGCCTCCACCATTACCCCCGACCTCATTGCCTATAACTCGATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGCGAGGCTCGCCTTCTTCTTCAAGAGATGGCCGACAATGACGTTCAACCCGACACCGTCAGCTATTCCACGCTTCTTGCCATCTACGTTGACAATCAAAAGTTTGTTGAAGCGCTTTCTTTATTCTCTCAAATGAATGAAGCCAAATGCCCCCTTGATCTCACCACCTGTAACATCGTGATTGATGTTTATGGTCAGCTTCACATGCCCAAGGAAGCGGATCGCCTTTTCTGGAGCATGAGGAAAATGGGGATTCAGCCCAATGTGGTTAGCTACAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTTGGGGAAGCCATCCATCTGTTTCGCTTGATGCAGAGTAAGGATGTACCGCAGAATGTCGTCACCTACAACACTATGATTAATATCTATGGCAAGACCCTTGAGCACGAGAAGGCTACCAATCTCGTTCAAGAAATGAAGAAAAGGGGTATTGAACCCAATGCCATCACCTATTCGACCATAATATCCATTTGGGAGAAGGCAGGCAAACTGGACCGCGCAGCTATCTTGTTTCAAAAATTAAGGAGTTCAGGAGTTCGAATTGACGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGGCTGGTTTAGTTGCTCATGCCAAGCGTCTGCTGCATGAGCTGAAGAGACCGGACAACATTCCCAGGGAGACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTTCGTCAAGCTTTTGATGCTGGAGAAGTCAAAGATATATCTGTGTTTGGGTGCATGATTAATCTTTTCTCAAAGAACAAAAAATATAGCAATGTAGTTGAAGTGTTTGAGAAGATGGGACAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCAGATGCTTTATATAGACAGATGCATGAGGAGGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTTTATATGGTGCAAAAAAGGATTTCACGATGGTAGAGTCGTTATTTGAGAAGCTGGATTCCAATCCTAATGTCAATAAGAAGGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGCGAGCAGATAGACTTAACGATGCTTCCCGAGTCATGAATAGGATGAACCAAAAAGCAATAAGAAGTCATGATCATACTTAG 2034 0.4685 MCTVSGSILLLLCCPSSSSSSISFLCCYSKIKSKKRVGNGINHLSVATATCAMAKDVWSRTCGSASSSPIPGERGSRRQQQGTYLDRSVDMEELLAAIGETQNESELYAVMSPYSGRQLSMRFMVSLLSREPDWQRTLALLDWINEKALYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRHKGLSPDRYTYSTLITSFAKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLCDYSKAISIFTRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMADNDVQPDTVSYSTLLAIYVDNQKFVEALSLFSQMNEAKCPLDLTTCNIVIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKDVPQNVVTYNTMINIYGKTLEHEKATNLVQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRIEEATWVFRQAFDAGEVKDISVFGCMINLFSKNKKYSNVVEVFEKMGQVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGAKKDFTMVESLFEKLDSNPNVNKKELHLVVASIYERADRLNDASRVMNRMNQKAIRSHDHT* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 400 434 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 261 294 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 295 328 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 576 605 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 331 364 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 156 188 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 190 223 IPR002885 -
Lapu6g00009 677 NCBIfam pentatricopeptide repeat 365 396 IPR002885 -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Lapu6g00009 677 Gene3D Tetratricopeptide repeat domain 348 507 IPR011990 GO:0005515
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Lapu6g00009 677 SUPERFAMILY HCP-like 212 425 - -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat 576 601 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat 470 497 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat 537 563 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat family 257 301 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat family 328 372 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat family 152 201 IPR002885 -
Lapu6g00009 677 Pfam PPR repeat family 398 442 IPR002885 -
Lapu6g00009 677 Gene3D Tetratricopeptide repeat domain 101 236 IPR011990 GO:0005515
Lapu6g00009 677 Gene3D Tetratricopeptide repeat domain 508 677 IPR011990 GO:0005515
Lapu6g00009 677 Gene3D Tetratricopeptide repeat domain 237 344 IPR011990 GO:0005515
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Lapu6g00009 677 FunFam pentatricopeptide repeat-containing protein At5g39980, chloroplastic 344 501 - -
Lapu6g00009 677 PANTHER OS03G0856100 PROTEIN 92 495 - -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Lapu6g00009 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00009 185 671 Glycosyltransferase AT1G05670 20.690 8.50e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00009 - - gmx:100782934 1152.5