Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00008 ATGAGTTTACCATTTTCTTCGGTGACAGTAAGGCCTTTTTCCATGAGTGGGAGCAATACGAAAGCATGTTGTAGTAGCAGAAGATTTAGTATTACAAGGTCGGAATTAACTGTAGCTCCCAATCCCAAACAGAGAAGGCAATTATCGAAGCAAGGATTTCCTCTGGCTGATTTACATGTGCATGAGGTTGTTCACCGTCAGTCTCAAATCATTAGTCCTTGTACCAAGCCTAAGCTACAGTTTCACTCAACTTTTCTGAATGATGCCTATGAAATGTGCAGAAATATCTGCGCCGAATATGCCAAGACCTTCTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCTGCGTATATGAGCACTGCTGTTCTTGATAGGTGGGAAGATAGATTGGACGACATTTTCAACGGACATCCCTATGATATGCTTGATGCTGCTCTTACTGATACACTGTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGAGACATGATACAAGGAATGAGAATGGATACAAGGAAAGCCCGCTACAACAATTTCCAAGAGTTATATCTTTACTGTTACTATGTGGCGGGAACTGTTGGCTTGATGACTGTTCCAATAATGGGTATCGCACAGGAGTCGGTCATCCCTGTACAAAGTGTATATGATGCTGCACTATATCTGGGTATAGGAAATCAACTCACCAACATTCTTAGAGATGTCGGAGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGACGAACTAGCCGAGTTTGGATTATGTGACAAGGATGTGTTTTCAAGAAATGTGAGTGAAAGATGGAGAAAGTTTATGAAGAATCAAATTACGAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTCGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCATTAATATTGTATCGTAAGATCCTAGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCTCATGTGGGACGAGCCAAGAAATTTTTTACTTTGCCTCTAGCTTATACTAGATCTCTCTCAAATCGCAAAACGAAATTTCGTGCTTCTTTGACAAGGCTTATTTAG 1158 0.4197 MSLPFSSVTVRPFSMSGSNTKACCSSRRFSITRSELTVAPNPKQRRQLSKQGFPLADLHVHEVVHRQSQIISPCTKPKLQFHSTFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAAYMSTAVLDRWEDRLDDIFNGHPYDMLDAALTDTLSKFPLDIKPFRDMIQGMRMDTRKARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVIPVQSVYDAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAEFGLCDKDVFSRNVSERWRKFMKNQITRARFYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAHVGRAKKFFTLPLAYTRSLSNRKTKFRASLTRLI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00008 385 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 22 371 - -
Lapu6g00008 385 CDD Trans_IPPS_HH 91 358 IPR033904 GO:0004311
Lapu6g00008 385 ProSitePatterns Squalene and phytoene synthases signature 2. 244 269 IPR019845 GO:0016765
Lapu6g00008 385 FunFam Phytoene synthase chloroplastic 81 364 - -
Lapu6g00008 385 Pfam Squalene/phytoene synthase 100 355 IPR002060 GO:0009058
Lapu6g00008 385 SFLD Squalene/Phytoene Synthase Like 87 369 IPR002060 GO:0009058
Lapu6g00008 385 SUPERFAMILY Terpenoid synthases 88 373 IPR008949 -
Lapu6g00008 385 Gene3D Farnesyl Diphosphate Synthase 81 363 IPR008949 -
Lapu6g00008 385 SFLD Phytoene synthase like 87 369 IPR044843 GO:0004311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00008 Lapu-Chr6 145246 147183 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00008 K02291 - gmx:100782394 653.669