Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g00006 ATGGGGAAGAAAGTCAGAAAGAAGAGTCGAAGTTCTGCCAAGGAGAAGGGGGTTGCTACCCATTTGCCAAAAAATGTTATTGAATCAACCAACCCGACTGTCGAGTCTGTTGATGAGGGCGGTTTGGTAGCCAAAGAGACAAATTCTTGCCCTCATCTCGTAAAAGGTGTTAATTTAAACAGATTGTCCACCAAGATTGAGTCTTGTGGATCTATAAGGTGTGAAGATTGTAGGGAAGGTGCGACTGATAGAAGAAGTGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGCTGCATCGTTGGATTCAAAATCTATATGGGTTTGTTTGGAGTGTGGTCAATATACCTGTGGAGGCGTGGGGCTACCAATAACCCCTCACTACCACGCGGTAGGGCATGCAAGGAAAAATCGGCATCCCTTGGTGGTTCATTTTGACAAGCCTCAACTGTGTTGGTGTTTTCCTTGCAACATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAATCGAGTCATCTTCTATCTGATGTTGTAAAATTGTTGAAAGGACGATCACAAGAAAAATCTTCAGTGGATATTGAAGATTTTTCTGCTGGGGATAGCAGTATTACTTCGGAAATTAAGTCTAGAGCTCTGTTCACAAATGATTCGTCTGTACAAGGTGGTTATGTAGTTAGAGGTATGCTTAATCTTGGGAATACTTGCTTCTTCAATTCAGTCATGCAAAATCTGCTGGCCATGAATAGATTGCGGGACAGTTTTCTAAAGTTAGATGCTCCTGTTGGGCCACTTATTAGTTCCTTGAAGAAGCTTTTCGCTGAAACAGCCCCTGTATCAGGATTGAAAAATGTTATAAATCCCAGATCTTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAATTTCGTGGATATCAGCAGCATGACAGTCACGAATTGCTCCGTTGTTTACTCGATGGGTTAAGTACTGAAGAACAGGCTGGAAGAAAGCATCATGGTTCTCCCAAGAGAGATGAGACCTCTTGCAATACGTTAGTTGATGCTTTATTTGGGGGTCAGATATCAAGTACTGTATGTTGCATAGAATGTGGGCATTTCTCAACAGTGTATGAACCTTTTTTAGATCTCTCACTTTCTGTTCCAACTAAGAAACCTCCACTTAGGAAGGCACAACAAGTTCCTCGAACCAAAAAAGCTAAACTTCCACCCAAGAAAGGAGGAAAGACTCGAGTCAAAGTTAACAGGGATACTGATCCCTTACCTGTTCAAACTCTGTCAAATCAATTATCCAGCCACGAATCATATTGCCCTGATCACTCTGTCATATCAGCTGCTGGAGAGATGGGGACTTGTTCCGGTGATTCTACATTATCAGGTTCTGAACAAATAAACAGTGCGGCTGTTAAAGAGGAGTTGTCTTCAACTAATTTGGTTACTGCTGGAGAGCCTCAACATATGCAAGTGCTTGACAATGGTGCGATGAAAACGTCAGATGATTTTACATGGTTGGATTATGTGGAAGCTGGAACAGTGATAGACGAGTGTGATTTTATTTCCCAAAATGAGGATGCTCCAGAGGTACAGGATACTGGGAACAAAGATGAATGTTTAAATGAATTCCATGGACAGGCCAGCTGTGAATCCAGTGGTCCTGTTTGTTTCCCTAACGAGGATCACAACTTAAGACCCGAATTTTCTTCAGCAAATGGGTGGGAAGATGAGGTTCCATTGCAAGTTCAAGATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCGGTTGCTGAGATCATAGGAGGAGATGGCGAGGCCTCCTCATCTGTTTTGGGTGGTCATCCAGAAGAATTGGAGTTTGACGGCTTTGGTGACTTATTCAACGAGCCTGAAGTTGTCGCTGGGCCTGCTCCCAGACCATCTTCATGTAGTGAGGTCATGGAAGCTAGCTTTACCATTGGAAGTAACAGTGAGTCTGATCCAGATGAAGTAGATGACACAGATTCCCCTGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTCTCTGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAGTTCTCCATCGTCAAAAGATGGAAGAAAAAAAGCAGGCACGAGCTATATCTGATGGAAATGATTCTGGAATTCATGATGAACCATTCCAAGCAGTTAATTCTTGTTCTGTTAGTGTCAGAACCAATGGAAATGGGAGCATAAAAAATGACCAAAACATGGAAAGTTTGGTCTCACGGGATAAACATGACACAAAGCTTGACAATGGTCAAAGGGATGAGCTTAGTTTAATCCTTGATGAAAGGGATAGTGGGGCATTTGAAATGGAAGATACTCATAACGATGAGTTACAGTCTTCAAGTTTTCATAATGCTTACAATGAAGAAAGCGCCAGTCATTTAGCTGCTGATTCTTGTATTGCAGAAAATGTCCAAAGAGATTCTCCGATGATAGTTAATGATAACAATGAATCACAGGATGCTGACTCCAAAAGTGTGAAAGTGAAGAGGGATGCAACCAAGAGGGTCCTCATATATAAAGCTCCGCCTGTTTTGACCATTCATTTGAAGAGATTCAGCCAAGATGCCCGTGGTCGCTTAAGTAAACTAAATGGCCATGTCAATTTCAGAGAAAAAATGGATATTAGACCATATATTGATCCCAGGTGTATAATTGAAGAGAAGTATGAATACCACTTGGTTGGTTTAGTGGAGCATTCGGGAACTATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGGCACAGGAACAGTGGGGAAGGTGATAAAGAGAATGAGGGCTCTACATGGTATCAGGCAAGTGATGCATATGTGCGTGAAGTTTCACTTGATGAAGTTCTTCGCTGTGAGGCGTACATTTTATTCTACGAAAAAGTTTGA 2940 0.4187 MGKKVRKKSRSSAKEKGVATHLPKNVIESTNPTVESVDEGGLVAKETNSCPHLVKGVNLNRLSTKIESCGSIRCEDCREGATDRRSGKGKGKHGKKKGAASLDSKSIWVCLECGQYTCGGVGLPITPHYHAVGHARKNRHPLVVHFDKPQLCWCFPCNMLIQVDKIEKTDESSHLLSDVVKLLKGRSQEKSSVDIEDFSAGDSSITSEIKSRALFTNDSSVQGGYVVRGMLNLGNTCFFNSVMQNLLAMNRLRDSFLKLDAPVGPLISSLKKLFAETAPVSGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEEQAGRKHHGSPKRDETSCNTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLSVPTKKPPLRKAQQVPRTKKAKLPPKKGGKTRVKVNRDTDPLPVQTLSNQLSSHESYCPDHSVISAAGEMGTCSGDSTLSGSEQINSAAVKEELSSTNLVTAGEPQHMQVLDNGAMKTSDDFTWLDYVEAGTVIDECDFISQNEDAPEVQDTGNKDECLNEFHGQASCESSGPVCFPNEDHNLRPEFSSANGWEDEVPLQVQDSEVLLLPYKEESSSVAEIIGGDGEASSSVLGGHPEELEFDGFGDLFNEPEVVAGPAPRPSSCSEVMEASFTIGSNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKVLHRQKMEEKKQARAISDGNDSGIHDEPFQAVNSCSVSVRTNGNGSIKNDQNMESLVSRDKHDTKLDNGQRDELSLILDERDSGAFEMEDTHNDELQSSSFHNAYNEESASHLAADSCIAENVQRDSPMIVNDNNESQDADSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFREKMDIRPYIDPRCIIEEKYEYHLVGLVEHSGTMRGGHYVAYVRGGHRNSGEGDKENEGSTWYQASDAYVREVSLDEVLRCEAYILFYEKV* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g00006 979 MobiDBLite consensus disorder prediction 709 728 - -
Lapu6g00006 979 Gene3D Cysteine proteinases 720 979 - -
Lapu6g00006 979 ProSiteProfiles Zinc finger UBP-type profile. 48 180 IPR001607 GO:0008270
Lapu6g00006 979 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 910 927 IPR018200 GO:0004843|GO:0006511
Lapu6g00006 979 MobiDBLite consensus disorder prediction 391 409 - -
Lapu6g00006 979 Gene3D Cysteine proteinases 639 716 - -
Lapu6g00006 979 Gene3D Cysteine proteinases 210 437 - -
Lapu6g00006 979 MobiDBLite consensus disorder prediction 386 421 - -
Lapu6g00006 979 FunFam Ubiquitinyl hydrolase 1 744 979 - -
Lapu6g00006 979 MobiDBLite consensus disorder prediction 1 21 - -
Lapu6g00006 979 SUPERFAMILY Cysteine proteinases 227 978 IPR038765 -
Lapu6g00006 979 FunFam Ubiquitinyl hydrolase 1 45 184 - -
Lapu6g00006 979 Pfam Ubiquitin carboxyl-terminal hydrolase 229 976 IPR001394 GO:0004843|GO:0016579
Lapu6g00006 979 SUPERFAMILY RING/U-box 48 169 - -
Lapu6g00006 979 SMART Zf_UBP_1 97 151 IPR001607 GO:0008270
Lapu6g00006 979 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 229 244 IPR018200 GO:0004843|GO:0006511
Lapu6g00006 979 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 180 IPR013083 -
Lapu6g00006 979 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 228 979 IPR028889 -
Lapu6g00006 979 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 44 979 - -
Lapu6g00006 979 Pfam Zn-finger in ubiquitin-hydrolases and other protein 74 163 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g00006 Lapu-Chr6 127545 132131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g00006 851 979 Miscellaneous Gene Families AT2G24640 34.848 3.30e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g00006 K11844 - gmx:100780952 1679.84