Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01084 ATGGCGAACCGGAACATGGAAAAGATGGCATCCATTGATGCACAGCTTCGGCAATTGGCTCCTGCCAAAGTGAGTGAGGATGACAAACTGATTGAGTATGATGCTCTTCTGCTGGATCGGTTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAAGAAACAGTTCAAGAAGTGTATGAACTTTCAGCTGAATATGAAGGAAAGCATGACCCTAAGAAACTTGAAGAACTTGGAAATGTGATAACCAGTTTGCATGCTGGGGACTCTATTGTTGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCCAACTTGGCTGAGGAGGTCCAGATTTCTCGACGCCGAAGGAACAAGTTGAAGAAAGGGGATTTTGCAGACGAGAACAATGCAACTACAGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTATTTGACTTGAAGAAATCTCCTCAGGAAGTATTTGATGCACTGAAAAACCAGACTGTTGATCTGGTTCTTACTGCTCATCCTACTCAATCAGTTCGTAGATCTTTGCTTCAAAAGCATGCAAGGATAAGGAACAGTTTATCTAAATTGTATGCCAAAGACATAACTCCTGATGATAAGCAGGAGCTTGATGAGGCCCTGCAAAGGGAGATTCAAGCTGCCTTCCGTACAGATGAAATCAGGAGGACCCCTCCAACACCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAACGGTGTTCCCAAATTTCTGCGCCGTGTTGATACAGCTTTGAACAATATAGGAATTAAGGAGCGTGTTCCTTATAATGCTCCCCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGTGATGGTAATCCAAGAGTAACACCTGAGGTGACTAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAACTTGTACTATTCCCAGATAGAAGATCTCATGTTTGAACTCTCTATGTGGCGCTGCAACGATGAACTACGCGTTTATGCAGATGAGGTTCACAGGTCTTCTAACAAAGATGAAGTTGCAAAACACTATATAGAATTTTGGAAAAAGGTTCCTACAAATGAACCATATCGTGTGGTACTTGGTGAAGTGAGGGATAGGCTTTATCAGACTCGTGAGCGTTCTCGCCATTTACTAGCTAATGGGTACTCTGATATTCCAGAGGAAAACACTTTCACCAGTGTTGAGGAGTTCCTGCAACCGCTTGAACTATGTTACAGATCACTGTGTGCTTGTGGTGATCGAGCAATTGCTGATGGAAGCCTTCTTGATTTCTTGAGACAAGTCTCCACTTTTGGACTGTCAATAGTGAGGCTTGATATCAGGCAAGAGTCAGATCGTCACACTGATGTGTTGGATGCCATTACCAAACACTTGGAGATTGGCTCCTACCAGGAGTGGTCCGAAGAGAAAAGGCAGGAATGGTTGTTGTCTGAATTAAGTGGCAAAAGGCCACTATTTGGACCTGACCTTCCTCAAACTGAAGAAATTAGAGATGTTTTGGACACATTTCATGTCATAGCTGAACTTCCACCAGATAACTTTGGAGCCTATATCATATCTATGGCAACAGCACCATCTGATGTCTTGGCAGTTGAGCTTCTACAACGTGAATGTCATGTCAAGCATCCATTAAGAGTAGTGCCATTGTTTGAAAAGCTAGCTGATCTAGAGGCTGCTCCTGCTGCTTTGGCACGGTTGTTCTCAGTAGACTGGTACAAAAATAGGATCGATGGGAAGCAAGAAGTGATGATTGGATACTCAGACTCAGGAAAAGATGCTGGGAGGTTCTCTGCAGCATGGCAGCTATATAAGGCTCAGGAGGAACTTATAAAGGTTGCTAAGAAGTTTGGTATTAAGCTAACCATGTTCCATGGTCGTGGTGGAACTGTTGGAAGAGGAGGAGGCCCTACTCATCTTGCTATTCTGTCTCAACCTCCAGACACAATCCATGGATCACTTCGTGTGACTGTCCAAGGTGAAGTTATTGAGCAGTCATTTGGAGAACAACACTTGTGTTTTAGAACACTACAACGTTTCACTGCTGCAACTCTAGAACATGGCATGAACCCCCCGATTTCTCCAAAACCAGAATGGCGCGCTGTGATGGATGAGATGGCTGTCATTGCTACTGAGGAATACCGATCTATTGTGTTCAAGGAACCGCGCTTTGTTGAGTATTTCCGCCTGGCTACACCAGAGTTGGAGTATGGCAGGATGAATATTGGAAGTCGACCAGCAAAGAGAAGGCCTAGTGGAGGCATTGAAACACTGCGTGCAATACCTTGGATCTTTGCATGGACGCAAACAAGGTTTCATCTTCCAGTGTGGCTAGGCTTTGGAGCAGCATTTAAAACAGTTATTAATAAAAATGCTAAAAATCTCAGTATGCTGCAAGAGATGTACAACCAATGGCCCTTCTTTAGGGTCACAATTGATTTGGTGGAAATGGTGTTTGCCAAAGGAGATCCAGAAATCGCGGCTCTGAATGATAGGCTCCTTGTTTCGAAGGATCTCTGGCCGTTTGGGGATCAATTAAGGAACAAATATGAAGAAACCAAGAAACTCCTACTTCAGGTGGCTGGACACAAGGAGATTCTTGAAGGGGACCCCTACTTGAAGCAAAGACTCAGGCTTCGTCATTCTCCCATTACTACCCTCAATGTTTTCCAAGCTTACACATTGAAACGTATTCGTGATCCTAACTACAACGTGAAGGTGCGACCCCGCATATCAAAGGAATCCGCAGAAACAAGCAAATCAGCTGATGAACTTATAAAACTGAACCCAACAAGTGAGTATGCCCCTGGTTTGGAAGACACCCTCATTCTGACTATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAA 2904 0.4397 MANRNMEKMASIDAQLRQLAPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNVITSLHAGDSIVVAKSFSHMLNLANLAEEVQISRRRRNKLKKGDFADENNATTESDIEETLKKLVFDLKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNSLSKLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWNGVPKFLRRVDTALNNIGIKERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVYADEVHRSSNKDEVAKHYIEFWKKVPTNEPYRVVLGEVRDRLYQTRERSRHLLANGYSDIPEENTFTSVEEFLQPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSIVRLDIRQESDRHTDVLDAITKHLEIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPPDNFGAYIISMATAPSDVLAVELLQRECHVKHPLRVVPLFEKLADLEAAPAALARLFSVDWYKNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKKFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMNPPISPKPEWRAVMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKTVINKNAKNLSMLQEMYNQWPFFRVTIDLVEMVFAKGDPEIAALNDRLLVSKDLWPFGDQLRNKYEETKKLLLQVAGHKEILEGDPYLKQRLRLRHSPITTLNVFQAYTLKRIRDPNYNVKVRPRISKESAETSKSADELIKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01084 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
Lapu5g01084 967 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Lapu5g01084 967 FunFam Phosphoenolpyruvate carboxylase 1 308 445 - -
Lapu5g01084 967 Coils Coil 104 124 - -
Lapu5g01084 967 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 4 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 Pfam Phosphoenolpyruvate carboxylase 35 967 IPR021135 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 967 IPR022805 GO:0006099|GO:0008964|GO:0015977
Lapu5g01084 967 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 967 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01084 Lapu-Chr5 21907118 21913207 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01084 K01595 - gmx:100805069 1841.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01084 5 21907118 21913207 Lapu5g00802 5 8105004 8110805 PCT