Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01028 ATGGCGGCAAGCACCAGTTCAGAAGGCACAACAACAGCACCTCTATTGGAAGAAAACAGAAGACTCCAAGTTATGGGATGGTGGAACAAAGTGTTGGACATGGAAGAGGCCAAGCACCAACTCTTGTTTTCCCTTCCAATGATTATTACCAACTTGTTCTATTACTTAATCACTTTGGTTTCTGTCATGCTTGTTGGCCACCTTGGAGAGCTTCAGCTTGCTGGCGCTACTCTTGCAAACTCATGGTTCAGCGTCACTGGCGTGGCTGTTATGGTTGGTTTGAGTGGGGCACTGGAAACATTGTGCGGGCAAGGATTTGGTGCAAAGGAATACCATGTGTTGGGAATTTACCTACAAGCCTCATGCATCATATCTCTTATTTTTTCCATCGTTATATCCATTATTTGGTTCTATACAGAACCCATCCTAGTGTTGCTTAACCAATCTCATGACATTGCAAGAACAGCTGCTCTTTATATGAGGCTTTTTATCCCGGGATTGTTTGCATATAGCTTCTTGCAAAACATCTTGAGGTTTCTTCAGACACAATCTGTTGTAATGCCATTGGTTGTACTCTCAGCTCTTCCATTGTTGGTTCATATTGGCATTGCATATGCCTTGGTTCAGGGTTCAGGTCTGAGTTTTACGGGTGCCCCAGTTGCAGCTTCTATTTCACTATGGATATCAATGCTATTACTAGCCTTGTATGTAATGTATGCTACGAAGTTCAAGCAGACATGGCAAGGATTTTCAATGCATTCATTCCATTACGTATTGACAAACATGAAACTAGCTCTGCCCTCTGCTGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTTTTGGTTTTCTTAGCTGGACTTTTTCCTGACTCACAGATAACAACTTCTTTGATTGCAATATGTGCAAATACGGAATTCATTGCCTACATGATCACTTATGGTCTCAGTGCAGCTGCAAGCACAAGGGTGTCCAATGAATTGGGAGCAGGCAACCCTGAACGAGCTAAACATGCGATGAATGTCACTCTCAAGCTCTCTCTCCTGCTTGGTTTCTGTTTTGTTTTGGCACTTGGATTTGGTCACAATATCTGGATTCAGTTTTTCAGTGATAGTTCTACAATCAAAGAGGAGTTTGCATCCGTGACACCTTTGCTTGCTCTATCCATATTGCTAGATGCCATCCAAGGTGTCTTGTCAGGGGTGGCCAGAGGATGTGGTTGGCAGCACTTGGCTGTTTACATTAACCTTGCAACCTTTTATCTTATTGGTCTACCAATTTCATGTCTCCTAGGGTTTAAGACCAATTTGCAATATAAGGGTTTATGGATTGGTCTGATTTGTGGACTGCTTTGTCAGACTGTGACTCTCTTCCTTTTCATAAGGCGTGCCAAATGGTCTAAATTAGATCTTTCCTACGAAGACAAAGATAAAAATCATCCTCTTCTTATTTAA 1455 0.4213 MAASTSSEGTTTAPLLEENRRLQVMGWWNKVLDMEEAKHQLLFSLPMIITNLFYYLITLVSVMLVGHLGELQLAGATLANSWFSVTGVAVMVGLSGALETLCGQGFGAKEYHVLGIYLQASCIISLIFSIVISIIWFYTEPILVLLNQSHDIARTAALYMRLFIPGLFAYSFLQNILRFLQTQSVVMPLVVLSALPLLVHIGIAYALVQGSGLSFTGAPVAASISLWISMLLLALYVMYATKFKQTWQGFSMHSFHYVLTNMKLALPSAAMVCLEYWAFEVLVFLAGLFPDSQITTSLIAICANTEFIAYMITYGLSAAASTRVSNELGAGNPERAKHAMNVTLKLSLLLGFCFVLALGFGHNIWIQFFSDSSTIKEEFASVTPLLALSILLDAIQGVLSGVARGCGWQHLAVYINLATFYLIGLPISCLLGFKTNLQYKGLWIGLICGLLCQTVTLFLFIRRAKWSKLDLSYEDKDKNHPLLI* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01028 484 NCBIfam MATE family efflux transporter 46 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lapu5g01028 484 PANTHER MULTIDRUG RESISTANCE PROTEIN 34 466 - -
Lapu5g01028 484 CDD MATE_eukaryotic 36 468 IPR045069 GO:0042910|GO:1990961
Lapu5g01028 484 Pfam MatE 267 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lapu5g01028 484 Pfam MatE 46 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01028 Lapu-Chr5 20671906 20686042 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01028 K03327 - gmx:100816310 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01028 5 20671906 20686042 Lapu5g01028 5 20671906 20686042 ECH