Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01019 ATGGCTGCAGCCACAAGCTTTGGAAATGTATGTATTCTGAGAAGAGCAGCTCAGACTTTTGCAATATCTCATTCTCATGTCCTCCACAGCAATACCACCTTCTCTTTCCAAAGGAAACTCTCCTCTCATCTTCTCTCTGTTTCAACTTCTTCAGCTTCTCGTGTAAGCCAGGCAGTACAAGCTTTAAAGGGAGAAATTGATGTGTTAGTCAAGGGAGTAGGAGAAAAAAGTGTAACAAAAGAAGTAAAACATATTCTTGAGATGGCTAGACGAGCATCATTGAAGCGAGAGACTCTCCATACAGATTTTCTAACACCTCCAGTGCTAAAGGAGTCTATGCAAGTTTTGGAAAAATTAGCAGACGTGAGAGCAATTGCTCAAGGAGGTTACCCTCAGGCTGAACGCTGTCGGATTTCTGTTGGACATCCAGAAGAACTGACTAGTGATCCGGATATTATTTCAGCATTAAGCATTAAAGGGAACTTCCAGTTTGAACCTTGCTCGCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAACTTGGGGATATTATATTACAGGGAGAGCAGGGCGCGCAGATAATTGTTGTGCCAGAACTTGTTGATTTTCTCATGTCAGCTTTAGTTAAGGTTCGAAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAAGCATCGGTAAGAGTTGATGCACTTGCTAGTGCCGGATTTAAGATTTCACGCTCAAAGCTAGTTGACATGATAAGCAATGGTGATGTGCGTGTCAACTGGATCCCTGTTACTACCAAAGGAACCACACTCAAAAGTGGAGATATTGTATCAGTTAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACCCCACAAAGAAAGGAAAGTTTGCAGTGGAGCTCATTCGGTATTTGTAG 972 0.4136 MAAATSFGNVCILRRAAQTFAISHSHVLHSNTTFSFQRKLSSHLLSVSTSSASRVSQAVQALKGEIDVLVKGVGEKSVTKEVKHILEMARRASLKRETLHTDFLTPPVLKESMQVLEKLADVRAIAQGGYPQAERCRISVGHPEELTSDPDIISALSIKGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVDFLMSALVKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASVRVDALASAGFKISRSKLVDMISNGDVRVNWIPVTTKGTTLKSGDIVSVSGKGRLKIGEINPTKKGKFAVELIRYL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01019 323 Pfam Putative RNA-binding domain in YlmH 153 228 IPR040591 -
Lapu5g01019 323 CDD S4 248 303 - -
Lapu5g01019 323 Gene3D - 75 141 - -
Lapu5g01019 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 78 287 - -
Lapu5g01019 323 ProSiteProfiles S4 RNA-binding domain profile. 248 308 - -
Lapu5g01019 323 Gene3D - 243 299 IPR036986 GO:0003723
Lapu5g01019 323 NCBIfam photosystem II S4 domain protein 78 321 IPR017506 -
Lapu5g01019 323 SUPERFAMILY Alpha-L RNA-binding motif 107 310 - -
Lapu5g01019 323 Gene3D - 149 231 IPR012677 -
Lapu5g01019 323 SMART s4_6 248 308 IPR002942 GO:0003723
Lapu5g01019 323 Pfam S4 domain 251 294 IPR002942 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01019 - - gmx:100793767 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01019 5 20476466 20482478 Lapu5g01019 5 20476466 20482478 ECH