Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00832 ATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTTCTATGAAATCCGTCCCGAATGCACCGATGTTCCCATTTCTCGATTTAAAATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTCCAGAAGGTTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACATCGCCGAAGAATGCAATATGCTACAATTAAAGAAGAATGCCGCCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTCACAGCACCTGTTGTTACTGAAGATGGTCTGCCAATTCAAGATCCATTGGTTCTAAAAGAAACAAATTCAGCCAAGGGATTGGCTGTACATCATCAAGATAGTAATAATCATTCAAGTATGGTTGATACAAATAGTTTAAAGAAGGTGACAGACAAGATAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTAGTTTTTTATGAGAGGCAAGAAAACCTGTCAAAACTATGGGATATTCTTGCTGTCTATGCTTGGATAGATAAAGATGTTGGCTATGGTCAAGGAATGTGTGACCTGTGCTCCCCTATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGGTTGATGCGCAGACTTCGCGGCAATTTTAGATGCACCGAGAGCTCTGTTGGGGTGTCAGCTCAACTAAGTAACTTGGCTTCTGTTACTGAAGTAATTGATCCAAAACTTCATAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGTATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGATTCATTGTATCTTTGGGAGATGATGTGGGCCCTGGAATATGATCCTGACTTGTTCTTGATGTATGAAACGCCTGAATCAGCTTCTGAAAAAGCTGAGGTCTCAAAAGGGAAATCAAAGTCAATACGTCAATGTGGAAAGTATGAGAGGGAATTTTTGAAGAGTGGATCAAAGAATGCTTCTGAAGCTCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAGAAGTGCAAAACTACTCCAAGAAGCACGTGGCTTGGATGATGTTGTCAAGATTTTGAATGACATAACTGGGAATCTAGATGCCAAAAAAGCTTGCAATGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG 1332 0.4032 MWRDPGVSADSFYEIRPECTDVPISRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIYRGGVHPSIRGEVWEFLLGCYDPKSTFEERDQIRHRRRMQYATIKEECRQLFPLVGSGRFVTAPVVTEDGLPIQDPLVLKETNSAKGLAVHHQDSNNHSSMVDTNSLKKVTDKIVVQWMLTLHQIGLDVVRTDRTLVFYERQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVSAQLSNLASVTEVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYETPESASEKAEVSKGKSKSIRQCGKYEREFLKSGSKNASEAPLPISVFLVASVLKDRSAKLLQEARGLDDVVKILNDITGNLDAKKACNGAMKLHKKYLKKAKKP* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00832 443 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 154 259 - -
Lapu5g00832 443 Pfam Rab-GTPase-TBC domain 154 327 IPR000195 -
Lapu5g00832 443 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 35 414 - -
Lapu5g00832 443 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
Lapu5g00832 443 SMART tbc_4 60 352 IPR000195 -
Lapu5g00832 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 289 IPR035969 -
Lapu5g00832 443 Gene3D - 265 442 - -
Lapu5g00832 443 FunFam TBC1 domain family member 15-like 161 259 - -
Lapu5g00832 443 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 436 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00832 Lapu-Chr5 8663924 8671102 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00832 - - gmx:100805808 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00832 5 8663924 8671102 Lapu5g00832 5 8663924 8671102 ECH