Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00489 ATGACCAAGCTCACTGTAAGAAGCAGCAAGAGAAGTGTAAGTGGCATTGCTAAGTTCAAATTCGTGGAGAAGCTCCAGAAGAGACTCTTACCAGGGAGAAACAACAAAGAAGGGTCTGTTTCAAACTCAACATATGTGCCGAAGGACGTGAAGGAAGGACACTTTGCTGTGATTGCCGAGGGTGGAGAGGAACAAAAGAGGTTCGTGCTGCCACTAAGTTGTTTATCCAACCCTACGTTTTTGAAGCTATTGGAGCAAGCAGAAGAAGAATACGGGTTTGATCATGAAGGTGCAGTAACCATTCCTTGCAGGCCTAGTGAGCTTGAGACGATACTGGCTCACCAATGGCATCAAGAACAAACTCAAACTACTGCTCTAAGAAAGTCTTATAGAAAATCCATGGTATTTTAA 411 0.438 MTKLTVRSSKRSVSGIAKFKFVEKLQKRLLPGRNNKEGSVSNSTYVPKDVKEGHFAVIAEGGEEQKRFVLPLSCLSNPTFLKLLEQAEEEYGFDHEGAVTIPCRPSELETILAHQWHQEQTQTTALRKSYRKSMVF* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00489 136 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 33 110 IPR003676 GO:0009733
Lapu5g00489 136 Pfam Auxin responsive protein 39 113 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00489 Lapu-Chr5 4349421 4349831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00489 25 125 Calmodulin-binding Proteins AT3G43120 39.806 9.98e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00489 - K14488 gmx:102668167 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00489 5 4349421 4349831 Lapu5g00489 5 4349421 4349831 ECH
Lapu5g00489 5 4349421 4349831 Lapu11g00425 11 7404377 7404784 PCT