Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00477 ATGGTAAATGGTACTACTCGTTCTAGTCACAGTGCTAAGGATGAAGAAAATAAAATCAGGAGGGTCACACAAAATGGTGTGAAGGGAAAAATAAAATCACATCCTAATGTATCAGATGCAACTGCTCTCAGACGGTCTCCTAGAGAGACATTATCAAAGAGGATAATTCCTAGCCCTTCAAGTACTCGGAAGTCTGGGCAATTTGAAAAGGGAGCAACACCATCACCGGCGGATAAAAAGAAATCTGAATTGGTTGAAAAAAAGAACATGCCAAGTTCTTTGAGAAGATCTGGAAGGACTAGGAGTTACTCTTCTACTAGTCACTCCGATTCAAAAAGCTCAGGTTCATTGAATTCAAACCCCAAGCCAAACAAAGAGAAGAGTGTTAGACAGTTGACATTTGAAGCTAAGGAAGTAAAGGAAAATGAGGAACAAGATCTGGGAACACCCCAGGTTAAAATAAAGAGAATGACTGCTCTTATGTACCGGTCTCTCTTTGAAGAACGAAAGCAAGTGCCTAATAGGACCGACAAGTCAAATCAAGGTGGCAACAATATTCGAGGCAAGATTAATGAGTGCTCTGAAGGTAGTCATTCTGATTGTCAAGAAGTCTCCAAGAATGATGCACTACCATCCGAAGATGGAAAGTTAAAAGAGATGAGAGTTAGCTCTGGGTTGATTGGTCCTGTGAAAGATCTGGTTGAAAATACCTTAACTCTAGATTCATTGGCACCGTCTAAAGCTGCAACTTCTGAGGCAGGTTTGGCACCTGAAAGGATATTGGATGAAGATTTAATCAGGAACACTGTTGGGGACGATAGAGGTGTAGAATTGATACCTTCTAAGAGCCCGGAAATCTCTGGTGATGTGGATTCAGATGCTTCTGCCACCTTGGTGAAGGGTGACAATTGCAACTTGATTCCTGATTCTGGTAGCCCGTTGAGAATTGGTGAAAAAATTATGGGGACTGACGGTCCATCTAATTCCATAATTTTTGAGCCAGGTTTGGTATCTGAAAGGGTTCAGCCTGATTGCTGCAGAGAAGAAACATTACCATCAAGGAATTCCAAGAATGGTGTTCTACTATCTGAAGATGGAAAATCGAAAGAGATGAGAGTTGATCATGGGTTGAGTAGTCGTGTGAAAGACCTAGTAGAAAATACTGTGTCTCCGGGTTCACTGGCACCATCTAATGCTGCAACTTATGAGATTGGTGTAGCACCTGAAAGCATTCAGCCTAATTGCCGCAGAGAGGAAACATTACAGGTGTTAGTGTCACACAATTCCATATTGGATGAAGACTTAATCAGAAACAGTGTTGGGTATGATAGTAGGGGTGACAAATTGGTGCCCTCTAAGAGAAAGGGAATTATGGTGGACATGGATTCAGATATTTCTGCCACATTGACTAAGGGTAACAACTGCGAATTGGTTTCTGATTGCAGTAGCCCTTCAGGGCCAGGTGGCAATATAATGGGGACTGATGGTTCACATTCCAAGCGGATAAGGTTGGATTATAATCCTATGGCCAGTGAGTCTTGTAACCCTTCTACAACCGAGCTTGAAGATGGGGATTATATTGCTGCAAGCAGGCTGCAGAAGGACTCTCAAATTGATAATGAAAAAGAAGCTGGTTTAATAACTAATTCCATTAACAGTGTCACTCAACTGAAGGAGAGGTTCTCAAGTCATAATACATACAGATGCAAGTCTGATTCCTTTAGGTTTGTTGAGTATTGGGTTCCTGTACAAATATCTAATCTGCAGCTTGAACAGTATTGTTCTATTTTAATTTCAAATTCTTCAATTCTGCGCTCCTCATCAAAGGTTGATAGCGTTGAGGCTGTTCGTGATGTTCTTATTTCAACCCGGAAGTGTTGTAGTCATCCCTATCTTGTTGGTCCAGAACTGCAACCTTCTCTTAACAAGGGTCTCGAACCAATTGAGTATCTTGATTTTGATTTAAAAGCAAGTGGCAAGTTGCAACTTCTTGATTCAATGCTTGAGGAGTTGAGAAAAAATGATTTAAGGGTGCTCATTCTTTTTCAGTCTATTGGAGGTTCTGGAAGAGTTATAGGAAATTATTTGGAAGACCTACTTCGACCAAGATTTGGTCCAGATTCGTATGAACGGATTGACAAAAATATTCTGCCTTCCAAGAGGCAAGCTGCCATGAAGAAATTTAATGACAAGAACAACAGACGATTTGTGTTTTTGTTAGACACATGTGCTTGCCTTCCAAGCATCAAATTGTCGTCTGTTGATTCCATTATTATATTTGATAGTGATTGGAACCCAATGAATGATATAAGATCCCTTCAGAAAATAACACTTGATTCACAGTTTGAATACATAAAAATATTCCGTTTATATTCGACTTTCACTGTTGAAGAAAAAGCCTTAATCCTTGCTAAGCAATGTAAGTCAATTGACTTCAATTTACAAAACATAAACTGGAGTACCAGTCATATGCTGTTGATGTGGGGTGCTTCTTGTCTATTTGATGAACTGAAAGCTTTTCATGATGGTGAAACTTCTGCATCAAATGTGAAATCCTTGTTTGGGCGACCATTTCTGAAAGAAGCAATGCATGAATTCTCATCCCTACTATCTCAGGACGGAGAACATGTTGGTTCAAGCAGCAGTTCAATCATATTGAAAGTGCAGCAAAATGGGGCAACGTACCATGGAAATTTTTCTTTGCTTGGTGAGCTAAAACTTGGTTTTCTGGATGAAGAGCCATCCCAATTTTTTTGGACAAAACTTTTGGACGGAAAACAGTTTCAGTGGAAGTACTTAAATAATTCATCTCAGAGGAGCAGGAAGAAAGTTCATCATTTTGATGGTTCGGTCAATGGGCCTGATCTTGTAAGTGAAGGAGCAGCAAAGAAGCGCAGGAAAGTTACCAATATTGTTGATCAGTCTTCTTCAAAATTTGAAGATGAAAAGTTACTCGCTGGTATCAAGGCAGGAACACCTGGAGACTTAGTGGATAGATCTCAAGGAGACAATGTTGAATCTGAGCCAAAAAACAGACTGCATGATGAACAGAGTAGCTTACATCTTTTGCTGAAGCCAGAGATCACAAAGCTCTGTGATTTTCTTCTTCTTCCGGATAAAGTGAAGAGCATGATCGATAAATTTCATGAATATATTATGAATAACCACGATGTCAATAGGGAACCGTTTTCAATATTACAGGCTTTTCAATTATCTCTGTGTTGGACTGCAGCTTCTTTGCTAAAGCACAAACTCGACCCCATTGCTTCTCTTATAAAAGATTTGAACTTCGAGTGTAAGAAAGAAGAGGTGGACTACATTTATTCTATGTTGCGTTGTTTGAAGAAAATATTTTTATATCGTACAGGAAATTATAATGATACCGACTCTCCAAAAGCATCTGAACCATTGAATGGGGTGTATACCAGAGTTGAACGAGAGCTTGAATTGTTCAAAAAAGATATATCTAAAAGTATTAAAGAAATTCAGAAGAAGTGCAAAAAGAAGCTGAAGAAGCTATGCCTTTTGCAAGAGGAAGAGAAGCAGAGGTTGAAGGCTGATATTGAGGAAGAAGAGGCTAAATTTGAGGAAAGGTACAAAATACAGTCAGCTGTTATTCGGTCCTGCTCTCCCAATGATGTTATAAGAATGGAAAAGCTTAGGGTTTTGAATATTGAATATGAAAAAGGAATTGAAGAACTGAAATGTCAGCATGAAACACAACTCAAGGATCTTGAAGCCAAGCAATCAGCTGACAAACAGAAGTTTCTTGATAAGGAGACCGCTTGGGTAGAAGATGTGGAATCTTGGGCACAAAATGAACTTCTAAAAATAGTTGCTTCAAAGGAGCTTGGGACTGGGTTTGAATCCTTCCAGACTTATGGTCAAGTACAGCCTGATAATGGTCTAAAGAATCATTTCGCAGAAGGAAAGGGTCATGATGATAAGGTTAAAGCCATGACAGATACTGTCACTGAGAATTCACCTTTATCTGGCAAAAGAGTTGCTAATAGGGCCACAGTAAGTTTTTTGGATAGAGAGGAACTTTTGGGACAGCATGGAATTATCAATATTACAGATTCTCCAGAAGATGATACTGCTGTGAATCCTCCTTCTTTCATGGAACAAGAATCTGATGGAGGTGCTGTAAATGAATTTTCATATAGAGAAGTAAGACCGAGCAATGGTCCCGATAAGAATACACATTCGAGTGCACCGCACCAAAACTCTGGAGACCCATCTAGCATACTTAGTGGACATATTCCAGTTGAAGAGCAAGAAACTAGAAATGAACTTGACACTGTCTGTATATCAGTAAGAGATGTACCTCTGGAAACAAGTGGGATGGTCAATTTTAACGACTGTCTACTGGATGCATCATCTCCTTCGAATCCCCCATCATCTATGACTCAAATGTCTGATAAAGGTCGACTAAAGGTCCCTGGTTTAGATAGGGTTTTATCACCAAGGACTTGTCAAGCTGCTTGTTCAAGTGATGAAGGTCCAAATAATATGTCCATTTCAAATCCACTTTTGGAGCAACAAACTACTGATGGAGTTCCTTTGAGTATTCCAGCAGCGGCTGATTGTCTTGATGATATGGAGCATTTAACAAATGCTGTGTTGGTGGCTAAAAGGACCACATCAGAAGAGCAGGAAGGAGAACCCAAAACGATGGCAGAATTGTCCCAAGAGTATCCAGTATCCAGAACAGTTATTGTCATGAATCATCCAGAACATGTAGGGCAATTATCTATGGAGTCCACTCCTGACCATGATACGTTTGGGGAATTGCAGCATTCTTCCGAACAACCTGAACTTGTATCTAATACTATTGATGTTGTACCAGTCGATCAATCCAATCAGGCTTCACTGATTGTGAAGCCTCAAAATCAGGTGCAACAATTACTATCTGCAGAGCTTCCATCTTCCCACCTGAATTCATCTAATTTTCATTTGGCAACTGAAGTTGAACATCAGCCAACAGTTGTTCCAAATCAAGACGTGCAATCTGATTCAAACTTGGAACATTCACATGAAGTTGGTGTGCACCCTGTCTCAAATTCAGACCCTATTACTGGTACACCCAGTGAAGTAAGAATGCATTCTGCAAACATGATAAATTCGTCAATTCCTCTGGAGATCAATCATCATCATATGCAAGCTGAAACACATTCAGCTTCCAGAAAGCCGCAATTGAGCTATTATGATCCACTCAAAATTGAATTGGATAGAATACGAAAAGTAGCAGATCAAACAATGAAAATCTATGAAGAGAAGAATATGCAGTTGAAAACTGAGTTTGAAAAGGAATTAGAGGAACTCCGCAGGAAGTACGATATTAAAATTCAAGGAATTGAAGCTGAATTCAAACAAAGAAAGACGACTCTGGATACAAGTCTTAATGTAGTTCGTATGAATAAGTTTTTGGCAGATGCTTTTAGGTCTAAATGCTCAAATCTTAAACCATCATGTACATCAGGAACGCTGCAAGATTCAAGTTTTGCACAGCAGCAGTTGCCTCCGCCTTCAAGACAACAAAATGCTAGTTGGCCATCCCTTGTCGCTGGTTCTTCTTCCTGTGGTCCTGCGACTAGTCGGCAGAGTCCCTCCATGGTACATCCTATACGGGCCGGTTACAGTACATCAGGATTTCCCACCAATGCTGCTGCAAGATCACCAATTATCAACACCATCACTTTGCCAGTAGGAAATCTTCAACCTGGTGGTAGTGAGATACGCGCCCCTGCACCACATCTTCAGCCTTATAGACCATGA 5778 0.4007 MVNGTTRSSHSAKDEENKIRRVTQNGVKGKIKSHPNVSDATALRRSPRETLSKRIIPSPSSTRKSGQFEKGATPSPADKKKSELVEKKNMPSSLRRSGRTRSYSSTSHSDSKSSGSLNSNPKPNKEKSVRQLTFEAKEVKENEEQDLGTPQVKIKRMTALMYRSLFEERKQVPNRTDKSNQGGNNIRGKINECSEGSHSDCQEVSKNDALPSEDGKLKEMRVSSGLIGPVKDLVENTLTLDSLAPSKAATSEAGLAPERILDEDLIRNTVGDDRGVELIPSKSPEISGDVDSDASATLVKGDNCNLIPDSGSPLRIGEKIMGTDGPSNSIIFEPGLVSERVQPDCCREETLPSRNSKNGVLLSEDGKSKEMRVDHGLSSRVKDLVENTVSPGSLAPSNAATYEIGVAPESIQPNCRREETLQVLVSHNSILDEDLIRNSVGYDSRGDKLVPSKRKGIMVDMDSDISATLTKGNNCELVSDCSSPSGPGGNIMGTDGSHSKRIRLDYNPMASESCNPSTTELEDGDYIAASRLQKDSQIDNEKEAGLITNSINSVTQLKERFSSHNTYRCKSDSFRFVEYWVPVQISNLQLEQYCSILISNSSILRSSSKVDSVEAVRDVLISTRKCCSHPYLVGPELQPSLNKGLEPIEYLDFDLKASGKLQLLDSMLEELRKNDLRVLILFQSIGGSGRVIGNYLEDLLRPRFGPDSYERIDKNILPSKRQAAMKKFNDKNNRRFVFLLDTCACLPSIKLSSVDSIIIFDSDWNPMNDIRSLQKITLDSQFEYIKIFRLYSTFTVEEKALILAKQCKSIDFNLQNINWSTSHMLLMWGASCLFDELKAFHDGETSASNVKSLFGRPFLKEAMHEFSSLLSQDGEHVGSSSSSIILKVQQNGATYHGNFSLLGELKLGFLDEEPSQFFWTKLLDGKQFQWKYLNNSSQRSRKKVHHFDGSVNGPDLVSEGAAKKRRKVTNIVDQSSSKFEDEKLLAGIKAGTPGDLVDRSQGDNVESEPKNRLHDEQSSLHLLLKPEITKLCDFLLLPDKVKSMIDKFHEYIMNNHDVNREPFSILQAFQLSLCWTAASLLKHKLDPIASLIKDLNFECKKEEVDYIYSMLRCLKKIFLYRTGNYNDTDSPKASEPLNGVYTRVERELELFKKDISKSIKEIQKKCKKKLKKLCLLQEEEKQRLKADIEEEEAKFEERYKIQSAVIRSCSPNDVIRMEKLRVLNIEYEKGIEELKCQHETQLKDLEAKQSADKQKFLDKETAWVEDVESWAQNELLKIVASKELGTGFESFQTYGQVQPDNGLKNHFAEGKGHDDKVKAMTDTVTENSPLSGKRVANRATVSFLDREELLGQHGIINITDSPEDDTAVNPPSFMEQESDGGAVNEFSYREVRPSNGPDKNTHSSAPHQNSGDPSSILSGHIPVEEQETRNELDTVCISVRDVPLETSGMVNFNDCLLDASSPSNPPSSMTQMSDKGRLKVPGLDRVLSPRTCQAACSSDEGPNNMSISNPLLEQQTTDGVPLSIPAAADCLDDMEHLTNAVLVAKRTTSEEQEGEPKTMAELSQEYPVSRTVIVMNHPEHVGQLSMESTPDHDTFGELQHSSEQPELVSNTIDVVPVDQSNQASLIVKPQNQVQQLLSAELPSSHLNSSNFHLATEVEHQPTVVPNQDVQSDSNLEHSHEVGVHPVSNSDPITGTPSEVRMHSANMINSSIPLEINHHHMQAETHSASRKPQLSYYDPLKIELDRIRKVADQTMKIYEEKNMQLKTEFEKELEELRRKYDIKIQGIEAEFKQRKTTLDTSLNVVRMNKFLADAFRSKCSNLKPSCTSGTLQDSSFAQQQLPPPSRQQNASWPSLVAGSSSCGPATSRQSPSMVHPIRAGYSTSGFPTNAAARSPIINTITLPVGNLQPGGSEIRAPAPHLQPYRP* 1926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 95 127 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 1354 1418 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 9 23 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 53 69 - -
Lapu5g00477 1925 PANTHER HELICASE PROTEIN MOM1 3 1925 IPR039322 GO:0031507
Lapu5g00477 1925 Coils Coil 1217 1251 - -
Lapu5g00477 1925 Gene3D - 576 807 IPR027417 -
Lapu5g00477 1925 Coils Coil 1747 1789 - -
Lapu5g00477 1925 Gene3D - 1735 1817 - -
Lapu5g00477 1925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 806 IPR027417 -
Lapu5g00477 1925 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 663 825 IPR001650 -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 74 93 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 990 1012 - -
Lapu5g00477 1925 Coils Coil 1167 1198 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 169 213 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 1 129 - -
Lapu5g00477 1925 Gene3D - 549 575 IPR038718 -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 176 192 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 193 213 - -
Lapu5g00477 1925 CDD SF2_C_SNF 658 770 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 1828 1875 - -
Lapu5g00477 1925 MobiDBLite consensus disorder prediction 1397 1416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00477 Lapu-Chr5 4154071 4175420 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00477 - K11643 var:108332924 2836.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00477 5 4154071 4175420 Lapu5g00477 5 4154071 4175420 ECH
Lapu5g00477 5 4154071 4175420 Lapu11g00436 11 7632800 7646011 PCT