Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00460 ATGCGAATCCTCCTCCTCCTCTCCCTCGCCACGCTCCTCCTCTTCTCCTCCTTCTCTCCCGCCCTCTGCGCCGCCGCCGCAGCAGCAGACGACGACAATGAAGACCTCAGTTTCCTCGAAGATGAGACCTCCGCGCCGGACCACCACCACCACTTCGCCGATGACGCCAGTTACGGCGACTTCGACGACTTCGAGGACGACTCCGATGCCTACAAGCTGCCCGAGGTGGACGAGAAGGACGTCGTCGTTTTGAAGGACAAGAATTTCAGCGACGTCATCAAGAACAACCGCTTCGTCATGGTCGAATTCTACGCGCCGTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCTGCCGCCTCCGAGCTCAAGGGCGAAGATGTCATCTTGGCAAAGGTTGATGCCACGGAGGAGAATGAATTGGGGCAGCAGTACGATGTGCAGGGTTTCCCCACCATCCACTTTTTCGCTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAGGAAGCTATAGTAACGTGGATTAAGAAGAAGATTGGACCGGGTATATACAACTTGACTACATTGGAGGAAGCTCAAAGTATTTTGACCAATGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTGCCGCTTCAAGAATTGAGGATGATGTCAATTTTTATCAAACTGTGAATTCTGACGTGGCAAAGCTTTTCCATATTGACCCTGATGTTAAGCGCCCAGCTTTGATCCTCGTCAAGAAGGAGGAAGAAAAACATAACCACTTTGATGGCAAATTTGAGAGGTCTGCAATAGCGGACTTTGTCTTTTCCAACAAGATTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCAGCAGTCTTCGAAAATTCAATCAAGAAACAGTTGTTGCTGTTTGCGACTTCAAATGATTCAGAGAAGTTCATCCCAGTATTTCAAGAAGCAGCAAAATCTTTCAAGGGAAAGTTGATCTTTGTATATGTGGACCTGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGGATGCTCCAAAAGTACTTGCATACACTGGGAATGATGATGGAAGAAAATTTGTGCTTGACGGAGAGGTGACTGCTGACAGAATTAAGGCATTTGGGGAAGATTTTCTTGAAGACAAGCTAAAACCATTTTACAAGTCCGATCCAATTCCTGATAGTAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAGCCAATATACGACAAGCTTGCAAAACATCTTCGTAGTATTGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCACCCCAGGGCTAAGCCCGATGGATACCCCACTCTTCTCTTCTTCCCAGCAGGAAACAAGAGTTTTGAGCCTATTACTGTTGATACAGATCGTACTGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTACTCAATCCGAGAGCTCTGACGCCAAGGAGAGCTCTGATGCCAAAGACAGCCAGAGTAGCAATAGTGATGTGAAGGATGAATTATGA 1698 0.4688 MRILLLLSLATLLLFSSFSPALCAAAAAADDDNEDLSFLEDETSAPDHHHHFADDASYGDFDDFEDDSDAYKLPEVDEKDVVVLKDKNFSDVIKNNRFVMVEFYAPWCGHCQALAPEYAAAASELKGEDVILAKVDATEENELGQQYDVQGFPTIHFFADGIHKPYNGQRTKEAIVTWIKKKIGPGIYNLTTLEEAQSILTNETKVVLGFLNSLVGPESEELAAASRIEDDVNFYQTVNSDVAKLFHIDPDVKRPALILVKKEEEKHNHFDGKFERSAIADFVFSNKIPLVTIFTRESAPAVFENSIKKQLLLFATSNDSEKFIPVFQEAAKSFKGKLIFVYVDLDNEDVGKPVSEYFGISGDAPKVLAYTGNDDGRKFVLDGEVTADRIKAFGEDFLEDKLKPFYKSDPIPDSNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLRSIESLVIAKMDGTTNEHPRAKPDGYPTLLFFPAGNKSFEPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTTQSESSDAKESSDAKDSQSSNSDVKDEL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00460 565 SUPERFAMILY Thioredoxin-like 74 184 IPR036249 -
Lapu5g00460 565 ProSitePatterns Thioredoxin family active site. 100 118 IPR017937 -
Lapu5g00460 565 NCBIfam protein disulfide-isomerase domain 84 182 IPR005788 GO:0003756
Lapu5g00460 565 CDD PDI_a_family 82 179 - -
Lapu5g00460 565 NCBIfam protein disulfide-isomerase 79 564 IPR005792 GO:0003756
Lapu5g00460 565 ProSiteProfiles Thioredoxin domain profile. 397 526 IPR013766 -
Lapu5g00460 565 ProSitePatterns Thioredoxin family active site. 439 457 IPR017937 -
Lapu5g00460 565 ProSiteProfiles Thioredoxin domain profile. 62 184 IPR013766 -
Lapu5g00460 565 PRINTS Thioredoxin family signature 107 116 - -
Lapu5g00460 565 PRINTS Thioredoxin family signature 99 107 - -
Lapu5g00460 565 PRINTS Thioredoxin family signature 148 159 - -
Lapu5g00460 565 SUPERFAMILY Thioredoxin-like 188 298 IPR036249 -
Lapu5g00460 565 Gene3D Glutaredoxin 184 287 - -
Lapu5g00460 565 Gene3D Glutaredoxin 69 183 - -
Lapu5g00460 565 PANTHER PROTEIN DISULFIDE ISOMERASE 6 552 - -
Lapu5g00460 565 CDD PDI_a_PDI_a'_C 419 521 - -
Lapu5g00460 565 MobiDBLite consensus disorder prediction 531 565 - -
Lapu5g00460 565 Pfam Thioredoxin-like domain 222 393 - -
Lapu5g00460 565 CDD PDI_b'_family 304 398 - -
Lapu5g00460 565 MobiDBLite consensus disorder prediction 545 565 - -
Lapu5g00460 565 SUPERFAMILY Thioredoxin-like 286 416 IPR036249 -
Lapu5g00460 565 FunFam protein disulfide-isomerase A2 183 287 - -
Lapu5g00460 565 CDD PDI_b_family 187 286 - -
Lapu5g00460 565 Pfam Thioredoxin 81 181 IPR013766 -
Lapu5g00460 565 Pfam Thioredoxin 419 504 IPR013766 -
Lapu5g00460 565 FunFam Protein disulfide-isomerase 70 182 - -
Lapu5g00460 565 Gene3D Glutaredoxin 413 527 - -
Lapu5g00460 565 FunFam Protein disulfide-isomerase 414 527 - -
Lapu5g00460 565 SUPERFAMILY Thioredoxin-like 415 526 IPR036249 -
Lapu5g00460 565 Gene3D Glutaredoxin 288 412 - -
Lapu5g00460 565 FunFam Protein disulfide-isomerase 288 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00460 Lapu-Chr5 3954035 3958527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00460 K09580 - gmx:100804924 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00460 5 3954035 3958527 Lapu5g00460 5 3954035 3958527 ECH
Lapu5g00460 5 3954035 3958527 Lapu11g00456 11 7892856 7897394 PCT