Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00397 ATGGATGCCACTGGAAAGATCAAGAAGGGCGCCGGAGGAAGGAAGGGCGGTGGACCAAAAAAGAAGCCAGTGTCAAGGTCTGTCAAGGCTGGTCTCCAATTCCCTGTCGGAAGAATTGGACGATATTTGAAGAAAGGAAGGTACTCGCAGCGTGTGGGAACAGGTGCTCCCGTTTATTTGGCTGCAGTTCTTGAATACCTAGCTGCTGAGGTTCTTGAGTTGGCAGGGAATGCAGCCCGTGACAACAAGAAGAACAGGATTATTCCAAGACATGTTCTTTTGGCTGTCAGAAACGATGAAGAATTGGGGAAATTGCTTGCTGGTGTGACCATTGCCCACGGTGGTGTTCTCCCCAACATTAACCCTGTTTTGTTGCCTAAGAAGACTGATAGGGCTTCCAAGGAGCCCAAATCTCCATCTAAGGCCACCAAATCTCCCAAAAAGGCTTAG 450 0.4911 MDATGKIKKGAGGRKGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTDRASKEPKSPSKATKSPKKA* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00397 149 SUPERFAMILY Histone-fold 13 130 IPR009072 GO:0046982
Lapu5g00397 149 MobiDBLite consensus disorder prediction 1 27 - -
Lapu5g00397 149 CDD H2A 23 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 FunFam Histone H2A 9 138 - -
Lapu5g00397 149 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 MobiDBLite consensus disorder prediction 128 142 - -
Lapu5g00397 149 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Lapu5g00397 149 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 Pfam Core histone H2A/H2B/H3/H4 20 97 IPR007125 GO:0003677
Lapu5g00397 149 Gene3D Histone, subunit A 9 137 IPR009072 GO:0046982
Lapu5g00397 149 PANTHER HISTONE H2A 20 129 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lapu5g00397 149 MobiDBLite consensus disorder prediction 123 149 - -
Lapu5g00397 149 Pfam C-terminus of histone H2A 100 134 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00397 Lapu-Chr5 3274890 3276243 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00397 K11251 - mof:131149564 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00397 5 3274890 3276243 Lapu5g00397 5 3274890 3276243 ECH